Results 21 - 40 of 260 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29140 | 5' | -58.9 | NC_006146.1 | + | 136773 | 0.78 | 0.24762 |
Target: 5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3' miRNA: 3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5' |
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29140 | 5' | -58.9 | NC_006146.1 | + | 136495 | 0.78 | 0.24762 |
Target: 5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3' miRNA: 3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5' |
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29140 | 5' | -58.9 | NC_006146.1 | + | 135659 | 0.78 | 0.24762 |
Target: 5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3' miRNA: 3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5' |
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29140 | 5' | -58.9 | NC_006146.1 | + | 159285 | 0.79 | 0.210343 |
Target: 5'- cUCGGG-GCCCUCGcagUCgGCAAACAGGGg -3' miRNA: 3'- -GGCCCuCGGGGGC---AGgUGUUUGUCCC- -5' |
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29140 | 5' | -58.9 | NC_006146.1 | + | 38968 | 0.75 | 0.391969 |
Target: 5'- uCCGGGugGGCCCCCagacUCuCGCAGAgGGGGc -3' miRNA: 3'- -GGCCC--UCGGGGGc---AG-GUGUUUgUCCC- -5' |
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29140 | 5' | -58.9 | NC_006146.1 | + | 137238 | 0.78 | 0.24762 |
Target: 5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3' miRNA: 3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5' |
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29140 | 5' | -58.9 | NC_006146.1 | + | 136309 | 0.78 | 0.24762 |
Target: 5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3' miRNA: 3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5' |
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29140 | 5' | -58.9 | NC_006146.1 | + | 125511 | 0.84 | 0.103404 |
Target: 5'- cCCcGGAGCCCCC-UCCAgAAACAGGGa -3' miRNA: 3'- -GGcCCUCGGGGGcAGGUgUUUGUCCC- -5' |
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29140 | 5' | -58.9 | NC_006146.1 | + | 137145 | 0.78 | 0.24762 |
Target: 5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3' miRNA: 3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5' |
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29140 | 5' | -58.9 | NC_006146.1 | + | 56554 | 0.85 | 0.098317 |
Target: 5'- gCGGGccaGGCCCCCGUCCACcuccguCAGGGg -3' miRNA: 3'- gGCCC---UCGGGGGCAGGUGuuu---GUCCC- -5' |
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29140 | 5' | -58.9 | NC_006146.1 | + | 136402 | 0.78 | 0.24762 |
Target: 5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3' miRNA: 3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5' |
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29140 | 5' | -58.9 | NC_006146.1 | + | 136866 | 0.78 | 0.24762 |
Target: 5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3' miRNA: 3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5' |
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29140 | 5' | -58.9 | NC_006146.1 | + | 136030 | 0.78 | 0.24762 |
Target: 5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3' miRNA: 3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5' |
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29140 | 5' | -58.9 | NC_006146.1 | + | 135751 | 0.78 | 0.24762 |
Target: 5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3' miRNA: 3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5' |
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29140 | 5' | -58.9 | NC_006146.1 | + | 135380 | 0.78 | 0.24762 |
Target: 5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3' miRNA: 3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5' |
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29140 | 5' | -58.9 | NC_006146.1 | + | 139147 | 0.79 | 0.215356 |
Target: 5'- aCGGGGGCUCCCGUCC-Cc--CGGGGg -3' miRNA: 3'- gGCCCUCGGGGGCAGGuGuuuGUCCC- -5' |
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29140 | 5' | -58.9 | NC_006146.1 | + | 137895 | 0.73 | 0.47755 |
Target: 5'- -aGGGGGUCCCCGUggACAGGgcCGGGGg -3' miRNA: 3'- ggCCCUCGGGGGCAggUGUUU--GUCCC- -5' |
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29140 | 5' | -58.9 | NC_006146.1 | + | 129851 | 0.74 | 0.425016 |
Target: 5'- cCCGa-GGCCCCCaGggccgCCGCGGACGGGGg -3' miRNA: 3'- -GGCccUCGGGGG-Ca----GGUGUUUGUCCC- -5' |
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29140 | 5' | -58.9 | NC_006146.1 | + | 167657 | 0.76 | 0.323294 |
Target: 5'- gCCGGGGGCCCgggggcgUGUCCcgcgacccgagggGCGAGCGGGGg -3' miRNA: 3'- -GGCCCUCGGGg------GCAGG-------------UGUUUGUCCC- -5' |
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29140 | 5' | -58.9 | NC_006146.1 | + | 137331 | 0.78 | 0.24762 |
Target: 5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3' miRNA: 3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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