miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29140 5' -58.9 NC_006146.1 + 157785 1.11 0.001671
Target:  5'- cCCGGGAGCCCCCGUCCACAAACAGGGc -3'
miRNA:   3'- -GGCCCUCGGGGGCAGGUGUUUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 136309 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 136495 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 108528 0.66 0.86982
Target:  5'- cCCaGGccGAGgCCCCGUCCuCGuACAGcGGg -3'
miRNA:   3'- -GG-CC--CUCgGGGGCAGGuGUuUGUC-CC- -5'
29140 5' -58.9 NC_006146.1 + 139147 0.79 0.215356
Target:  5'- aCGGGGGCUCCCGUCC-Cc--CGGGGg -3'
miRNA:   3'- gGCCCUCGGGGGCAGGuGuuuGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 135194 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 135380 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 135473 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 135751 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 136216 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 135937 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 135659 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 56554 0.85 0.098317
Target:  5'- gCGGGccaGGCCCCCGUCCACcuccguCAGGGg -3'
miRNA:   3'- gGCCC---UCGGGGGCAGGUGuuu---GUCCC- -5'
29140 5' -58.9 NC_006146.1 + 136030 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 125511 0.84 0.103404
Target:  5'- cCCcGGAGCCCCC-UCCAgAAACAGGGa -3'
miRNA:   3'- -GGcCCUCGGGGGcAGGUgUUUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 135566 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 136123 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 136402 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 159285 0.79 0.210343
Target:  5'- cUCGGG-GCCCUCGcagUCgGCAAACAGGGg -3'
miRNA:   3'- -GGCCCuCGGGGGC---AGgUGUUUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 135287 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.