miRNA display CGI


Results 1 - 20 of 260 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29140 5' -58.9 NC_006146.1 + 14181 0.66 0.86982
Target:  5'- gCCaGGcuGGaCCCCCGgagCCugG-ACGGGGa -3'
miRNA:   3'- -GGcCC--UC-GGGGGCa--GGugUuUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 24023 0.66 0.847773
Target:  5'- aCCGGcGAGgCgUCGUCCcccuGGCGGGGu -3'
miRNA:   3'- -GGCC-CUCgGgGGCAGGugu-UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 42549 0.66 0.840059
Target:  5'- -aGGGGGCCUguCCGUCCGuCGGcuucaucucCAGGGc -3'
miRNA:   3'- ggCCCUCGGG--GGCAGGU-GUUu--------GUCCC- -5'
29140 5' -58.9 NC_006146.1 + 71218 0.66 0.839278
Target:  5'- gCCGGGGGCUUCgaGUCCuggcugguCAAcuccuggggccugGCGGGGg -3'
miRNA:   3'- -GGCCCUCGGGGg-CAGGu-------GUU-------------UGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 78812 0.66 0.832171
Target:  5'- cCUGGGAgGCCCaCgCGUCCagGCAGccgugucCGGGGg -3'
miRNA:   3'- -GGCCCU-CGGG-G-GCAGG--UGUUu------GUCCC- -5'
29140 5' -58.9 NC_006146.1 + 36218 0.66 0.832171
Target:  5'- cCCGGGAGCgCaagCCGgCCGgGgaggaGGCAGGGc -3'
miRNA:   3'- -GGCCCUCG-Gg--GGCaGGUgU-----UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 168218 0.66 0.832171
Target:  5'- gCCaGGGuGCUgCCGUCuCAUAAACAGcugaGGg -3'
miRNA:   3'- -GG-CCCuCGGgGGCAG-GUGUUUGUC----CC- -5'
29140 5' -58.9 NC_006146.1 + 65935 0.66 0.832171
Target:  5'- cUCGGGAGCCCCaggCCuuuu-UGGGGa -3'
miRNA:   3'- -GGCCCUCGGGGgcaGGuguuuGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 208 0.66 0.832171
Target:  5'- gCCGGu-GCCCCCG-CgACGGucccCGGGGc -3'
miRNA:   3'- -GGCCcuCGGGGGCaGgUGUUu---GUCCC- -5'
29140 5' -58.9 NC_006146.1 + 22618 0.66 0.855309
Target:  5'- gCuGGAGCUCCUGUUCugGGuGCuGGGg -3'
miRNA:   3'- gGcCCUCGGGGGCAGGugUU-UGuCCC- -5'
29140 5' -58.9 NC_006146.1 + 449 0.66 0.862659
Target:  5'- gCGGGAcacGCCCCCGggUCCcccgGCAcGCGccGGGc -3'
miRNA:   3'- gGCCCU---CGGGGGC--AGG----UGUuUGU--CCC- -5'
29140 5' -58.9 NC_006146.1 + 1380 0.66 0.862659
Target:  5'- gCGGGAcacGCCCCCGggUCCcccgGCAcGCGccGGGc -3'
miRNA:   3'- gGCCCU---CGGGGGC--AGG----UGUuUGU--CCC- -5'
29140 5' -58.9 NC_006146.1 + 33896 0.66 0.868403
Target:  5'- aCCGGGcAGCggaCCCGgcagcggcccggCCACccccgccgGAGCGGGGc -3'
miRNA:   3'- -GGCCC-UCGg--GGGCa-----------GGUG--------UUUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 73050 0.66 0.867692
Target:  5'- cCCGGGgucggcGGCCCCC-UCCucCAGGucgugguacuucacCAGGGu -3'
miRNA:   3'- -GGCCC------UCGGGGGcAGGu-GUUU--------------GUCCC- -5'
29140 5' -58.9 NC_006146.1 + 107644 0.66 0.862659
Target:  5'- cCCaGGuaGAGCCcCCCGgaggCCAUugccccauacagAAACAGGGu -3'
miRNA:   3'- -GG-CC--CUCGG-GGGCa---GGUG------------UUUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 122745 0.66 0.862659
Target:  5'- uCUGGaGGCCCCUacgagGggUACGAGCGGGGg -3'
miRNA:   3'- -GGCCcUCGGGGG-----CagGUGUUUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 115275 0.66 0.862659
Target:  5'- cUCGGGGGCCCUCuUCUACGAcuacguguACgAGGc -3'
miRNA:   3'- -GGCCCUCGGGGGcAGGUGUU--------UG-UCCc -5'
29140 5' -58.9 NC_006146.1 + 19010 0.66 0.862659
Target:  5'- gUGGGGGCCCCCucgaguuccacGUCUACGAcauCcuGGa -3'
miRNA:   3'- gGCCCUCGGGGG-----------CAGGUGUUu--GucCC- -5'
29140 5' -58.9 NC_006146.1 + 3244 0.66 0.862659
Target:  5'- gCGGGAcacGCCCCCGggUCCcccgGCAcGCGccGGGc -3'
miRNA:   3'- gGCCCU---CGGGGGC--AGG----UGUuUGU--CCC- -5'
29140 5' -58.9 NC_006146.1 + 2312 0.66 0.862659
Target:  5'- gCGGGAcacGCCCCCGggUCCcccgGCAcGCGccGGGc -3'
miRNA:   3'- gGCCCU---CGGGGGC--AGG----UGUuUGU--CCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.