miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29140 5' -58.9 NC_006146.1 + 170681 0.67 0.824118
Target:  5'- gCCaGGGGCgCCCCGgggaCCGuc-GCGGGGg -3'
miRNA:   3'- -GGcCCUCG-GGGGCa---GGUguuUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 170461 0.73 0.47755
Target:  5'- cCCGGGGGCgugUCCCGcgacCCgagggGCGAGCGGGGg -3'
miRNA:   3'- -GGCCCUCG---GGGGCa---GG-----UGUUUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 170403 0.68 0.745327
Target:  5'- cCUGGGGGCCUCgGgg-GCGGAgGGGGg -3'
miRNA:   3'- -GGCCCUCGGGGgCaggUGUUUgUCCC- -5'
29140 5' -58.9 NC_006146.1 + 170182 0.68 0.763675
Target:  5'- -aGGGGGCUCCCGagggcggggCCGgGgccuGGCGGGGg -3'
miRNA:   3'- ggCCCUCGGGGGCa--------GGUgU----UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 170002 0.67 0.827359
Target:  5'- cCCGGGGGgcggcgcgcggccuuCCCCCGUCUGCucccGCGGc- -3'
miRNA:   3'- -GGCCCUC---------------GGGGGCAGGUGuu--UGUCcc -5'
29140 5' -58.9 NC_006146.1 + 169744 0.69 0.717144
Target:  5'- -gGGGAGCCCCgGggcggCC-CGGggacccucGCGGGGg -3'
miRNA:   3'- ggCCCUCGGGGgCa----GGuGUU--------UGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 169530 0.73 0.47755
Target:  5'- cCCGGGGGCgugUCCCGcgacCCgagggGCGAGCGGGGg -3'
miRNA:   3'- -GGCCCUCG---GGGGCa---GG-----UGUUUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 169472 0.68 0.745327
Target:  5'- cCUGGGGGCCUCgGgg-GCGGAgGGGGg -3'
miRNA:   3'- -GGCCCUCGGGGgCaggUGUUUgUCCC- -5'
29140 5' -58.9 NC_006146.1 + 169251 0.68 0.763675
Target:  5'- -aGGGGGCUCCCGagggcggggCCGgGgccuGGCGGGGg -3'
miRNA:   3'- ggCCCUCGGGGGCa--------GGUgU----UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 169070 0.67 0.827359
Target:  5'- cCCGGGGGgcggcgcgcggccuuCCCCCGUCUGCucccGCGGc- -3'
miRNA:   3'- -GGCCCUC---------------GGGGGCAGGUGuu--UGUCcc -5'
29140 5' -58.9 NC_006146.1 + 168812 0.69 0.717144
Target:  5'- -gGGGAGCCCCgGggcggCC-CGGggacccucGCGGGGg -3'
miRNA:   3'- ggCCCUCGGGGgCa----GGuGUU--------UGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 168598 0.73 0.47755
Target:  5'- cCCGGGGGCgugUCCCGcgacCCgagggGCGAGCGGGGg -3'
miRNA:   3'- -GGCCCUCG---GGGGCa---GG-----UGUUUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 168540 0.68 0.745327
Target:  5'- cCUGGGGGCCUCgGgg-GCGGAgGGGGg -3'
miRNA:   3'- -GGCCCUCGGGGgCaggUGUUUgUCCC- -5'
29140 5' -58.9 NC_006146.1 + 168468 0.69 0.69801
Target:  5'- aCGGuGcgcagauccGGCCUCaCGUCCACGGuCGGGGg -3'
miRNA:   3'- gGCC-C---------UCGGGG-GCAGGUGUUuGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 168319 0.68 0.763675
Target:  5'- -aGGGGGCUCCCGagggcggggCCGgGgccuGGCGGGGg -3'
miRNA:   3'- ggCCCUCGGGGGCa--------GGUgU----UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 168218 0.66 0.832171
Target:  5'- gCCaGGGuGCUgCCGUCuCAUAAACAGcugaGGg -3'
miRNA:   3'- -GG-CCCuCGGgGGCAG-GUGUUUGUC----CC- -5'
29140 5' -58.9 NC_006146.1 + 168138 0.67 0.827359
Target:  5'- cCCGGGGGgcggcgcgcggccuuCCCCCGUCUGCucccGCGGc- -3'
miRNA:   3'- -GGCCCUC---------------GGGGGCAGGUGuu--UGUCcc -5'
29140 5' -58.9 NC_006146.1 + 167880 0.69 0.717144
Target:  5'- -gGGGAGCCCCgGggcggCC-CGGggacccucGCGGGGg -3'
miRNA:   3'- ggCCCUCGGGGgCa----GGuGUU--------UGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 167657 0.76 0.323294
Target:  5'- gCCGGGGGCCCgggggcgUGUCCcgcgacccgagggGCGAGCGGGGg -3'
miRNA:   3'- -GGCCCUCGGGg------GCAGG-------------UGUUUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 167608 0.68 0.745327
Target:  5'- cCUGGGGGCCUCgGgg-GCGGAgGGGGg -3'
miRNA:   3'- -GGCCCUCGGGGgCaggUGUUUgUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.