miRNA display CGI


Results 21 - 40 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29141 3' -46.9 NC_006146.1 + 84371 0.67 0.999769
Target:  5'- -gGUGCUaggCGUGGACcGGGCgGCCa -3'
miRNA:   3'- ggUACGAcaaGUAUUUGaCCUGgUGG- -5'
29141 3' -46.9 NC_006146.1 + 60580 0.68 0.999705
Target:  5'- aCAUGCUGUUUGacggGGACaGGGCgGCg -3'
miRNA:   3'- gGUACGACAAGUa---UUUGaCCUGgUGg -5'
29141 3' -46.9 NC_006146.1 + 152659 0.68 0.999628
Target:  5'- cCCAgGCUGUcCAUGAGCUcccccaGGCCGuCCa -3'
miRNA:   3'- -GGUaCGACAaGUAUUUGAc-----CUGGU-GG- -5'
29141 3' -46.9 NC_006146.1 + 138857 0.68 0.999628
Target:  5'- gCCAcGCccgGgUCAUGAcCUGGGCCAgCg -3'
miRNA:   3'- -GGUaCGa--CaAGUAUUuGACCUGGUgG- -5'
29141 3' -46.9 NC_006146.1 + 37807 0.68 0.999628
Target:  5'- aCCcgGCUuaaaGcUCucgGAGCgGGACCACCc -3'
miRNA:   3'- -GGuaCGA----CaAGua-UUUGaCCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 113576 0.68 0.999628
Target:  5'- uCCAUGCUGacccUCGggagAGGCcGGGUCGCCa -3'
miRNA:   3'- -GGUACGACa---AGUa---UUUGaCCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 156627 0.68 0.999532
Target:  5'- aCGggGCUGa--GUGGACUGGGCCucuuCCu -3'
miRNA:   3'- gGUa-CGACaagUAUUUGACCUGGu---GG- -5'
29141 3' -46.9 NC_006146.1 + 153549 0.68 0.999532
Target:  5'- aCGggGCUGa--GUGGACUGGGCCucuuCCu -3'
miRNA:   3'- gGUa-CGACaagUAUUUGACCUGGu---GG- -5'
29141 3' -46.9 NC_006146.1 + 150471 0.68 0.999532
Target:  5'- aCGggGCUGa--GUGGACUGGGCCucuuCCu -3'
miRNA:   3'- gGUa-CGACaagUAUUUGACCUGGu---GG- -5'
29141 3' -46.9 NC_006146.1 + 147393 0.68 0.999532
Target:  5'- aCGggGCUGa--GUGGACUGGGCCucuuCCu -3'
miRNA:   3'- gGUa-CGACaagUAUUUGACCUGGu---GG- -5'
29141 3' -46.9 NC_006146.1 + 144315 0.68 0.999532
Target:  5'- aCGggGCUGa--GUGGACUGGGCCucuuCCu -3'
miRNA:   3'- gGUa-CGACaagUAUUUGACCUGGu---GG- -5'
29141 3' -46.9 NC_006146.1 + 141237 0.68 0.999532
Target:  5'- aCGggGCUGa--GUGGACUGGGCCucuuCCu -3'
miRNA:   3'- gGUa-CGACaagUAUUUGACCUGGu---GG- -5'
29141 3' -46.9 NC_006146.1 + 99708 0.68 0.999532
Target:  5'- gCCccGCUGgaCuucuACUGGcCCACCg -3'
miRNA:   3'- -GGuaCGACaaGuauuUGACCuGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 24209 0.68 0.999417
Target:  5'- gCC-UGCgagGUUCuguugGGGCcgGGGCCGCCc -3'
miRNA:   3'- -GGuACGa--CAAGua---UUUGa-CCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 117039 0.69 0.998909
Target:  5'- cCCAguaGgUGUUgAUGcACaGGGCCACCa -3'
miRNA:   3'- -GGUa--CgACAAgUAUuUGaCCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 14160 0.69 0.998887
Target:  5'- gCCGUggaGCUGagCGUcugcgccAGGCUGGACCcCCg -3'
miRNA:   3'- -GGUA---CGACaaGUA-------UUUGACCUGGuGG- -5'
29141 3' -46.9 NC_006146.1 + 47809 0.69 0.998392
Target:  5'- cCCAccGCcGUcUCAUGGGCUcGGGCUGCCa -3'
miRNA:   3'- -GGUa-CGaCA-AGUAUUUGA-CCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 127387 0.69 0.998392
Target:  5'- cUCGUGgaGgugUCuugGGGCUGGGCCccGCCg -3'
miRNA:   3'- -GGUACgaCa--AGua-UUUGACCUGG--UGG- -5'
29141 3' -46.9 NC_006146.1 + 156105 0.7 0.997238
Target:  5'- -gAUGCUGccagaaAUAGuuGCUGGGCCACUu -3'
miRNA:   3'- ggUACGACaag---UAUU--UGACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 143793 0.7 0.997238
Target:  5'- -gAUGCUGccagaaAUAGuuGCUGGGCCACUu -3'
miRNA:   3'- ggUACGACaag---UAUU--UGACCUGGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.