miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29141 3' -46.9 NC_006146.1 + 84371 0.67 0.999769
Target:  5'- -gGUGCUaggCGUGGACcGGGCgGCCa -3'
miRNA:   3'- ggUACGAcaaGUAUUUGaCCUGgUGG- -5'
29141 3' -46.9 NC_006146.1 + 88807 0.71 0.995468
Target:  5'- gCC-UGCUGggCAUGuuuGGCUGGGCCugaggcuCCc -3'
miRNA:   3'- -GGuACGACaaGUAU---UUGACCUGGu------GG- -5'
29141 3' -46.9 NC_006146.1 + 92910 0.74 0.962402
Target:  5'- cCCGUGCUGUcCAgacAGAgaGGACCGgCa -3'
miRNA:   3'- -GGUACGACAaGUa--UUUgaCCUGGUgG- -5'
29141 3' -46.9 NC_006146.1 + 94012 0.71 0.994704
Target:  5'- aCAUGCUa-UCAUAGGCagcgUGGACUACUu -3'
miRNA:   3'- gGUACGAcaAGUAUUUG----ACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 95931 0.67 0.99986
Target:  5'- aCCAUgaaGCUGaccgugCGUGAcCUGcuGACCACCa -3'
miRNA:   3'- -GGUA---CGACaa----GUAUUuGAC--CUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 96007 0.67 0.999769
Target:  5'- aCGaGC-GUUaCGUGGACUGGaucuguGCCACCg -3'
miRNA:   3'- gGUaCGaCAA-GUAUUUGACC------UGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 99708 0.68 0.999532
Target:  5'- gCCccGCUGgaCuucuACUGGcCCACCg -3'
miRNA:   3'- -GGuaCGACaaGuauuUGACCuGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 100926 0.7 0.995881
Target:  5'- aCCGUGCUGUUCuUGGccauccucaagcuCUGGuCCAUCc -3'
miRNA:   3'- -GGUACGACAAGuAUUu------------GACCuGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 105358 0.67 0.99986
Target:  5'- aCCGagGCUcugaGUu-GCUGGGCCACCa -3'
miRNA:   3'- -GGUa-CGAcaagUAuuUGACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 110703 0.66 0.999918
Target:  5'- uCCAccUGCUGUUUGUGGAC-GaGGCCAa- -3'
miRNA:   3'- -GGU--ACGACAAGUAUUUGaC-CUGGUgg -5'
29141 3' -46.9 NC_006146.1 + 112870 0.66 0.999975
Target:  5'- aCUAUGCgc-UCGUAGGCcGGGCuCugCg -3'
miRNA:   3'- -GGUACGacaAGUAUUUGaCCUG-GugG- -5'
29141 3' -46.9 NC_006146.1 + 113576 0.68 0.999628
Target:  5'- uCCAUGCUGacccUCGggagAGGCcGGGUCGCCa -3'
miRNA:   3'- -GGUACGACa---AGUa---UUUGaCCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 113658 0.74 0.969151
Target:  5'- gCCuUGCUGacCAcGGGCccgUGGACCACCg -3'
miRNA:   3'- -GGuACGACaaGUaUUUG---ACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 114124 0.66 0.999938
Target:  5'- gUCGUGgUGUUCAUGucggaugaGGCUccGGACCAg- -3'
miRNA:   3'- -GGUACgACAAGUAU--------UUGA--CCUGGUgg -5'
29141 3' -46.9 NC_006146.1 + 116642 0.66 0.999975
Target:  5'- aCCAUacaUGgcCAcAAACUGGGCgGCCa -3'
miRNA:   3'- -GGUAcg-ACaaGUaUUUGACCUGgUGG- -5'
29141 3' -46.9 NC_006146.1 + 117039 0.69 0.998909
Target:  5'- cCCAguaGgUGUUgAUGcACaGGGCCACCa -3'
miRNA:   3'- -GGUa--CgACAAgUAUuUGaCCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 117560 0.7 0.997238
Target:  5'- uUCAgGCUGUUCAggguaUGGGCCGgCg -3'
miRNA:   3'- -GGUaCGACAAGUauuugACCUGGUgG- -5'
29141 3' -46.9 NC_006146.1 + 118013 0.66 0.999938
Target:  5'- aCCAUGCgGggCucgGGGCgcgcgaGGACCACg -3'
miRNA:   3'- -GGUACGaCaaGua-UUUGa-----CCUGGUGg -5'
29141 3' -46.9 NC_006146.1 + 120890 0.67 0.99986
Target:  5'- cCCcgGCUG--CAUcAACcGGAUCGCCu -3'
miRNA:   3'- -GGuaCGACaaGUAuUUGaCCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 121346 0.66 0.999966
Target:  5'- gCCAUGCUGggCcUGgccGGCgUGGccuCCGCCc -3'
miRNA:   3'- -GGUACGACaaGuAU---UUG-ACCu--GGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.