miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29141 3' -46.9 NC_006146.1 + 10810 0.67 0.99986
Target:  5'- gCCAcGCUGggCAccGGCUacacGGGCCACa -3'
miRNA:   3'- -GGUaCGACaaGUauUUGA----CCUGGUGg -5'
29141 3' -46.9 NC_006146.1 + 14160 0.69 0.998887
Target:  5'- gCCGUggaGCUGagCGUcugcgccAGGCUGGACCcCCg -3'
miRNA:   3'- -GGUA---CGACaaGUA-------UUUGACCUGGuGG- -5'
29141 3' -46.9 NC_006146.1 + 24209 0.68 0.999417
Target:  5'- gCC-UGCgagGUUCuguugGGGCcgGGGCCGCCc -3'
miRNA:   3'- -GGuACGa--CAAGua---UUUGa-CCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 24445 0.71 0.992865
Target:  5'- -gGUGCUGcgcccgCGU-GugUGGACCGCCc -3'
miRNA:   3'- ggUACGACaa----GUAuUugACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 32230 0.7 0.997238
Target:  5'- cCCAUGCUcUUCccagaAGACUGGuauccucCCACCa -3'
miRNA:   3'- -GGUACGAcAAGua---UUUGACCu------GGUGG- -5'
29141 3' -46.9 NC_006146.1 + 33289 0.71 0.99384
Target:  5'- gCCcgGCUGggCAcc-GCUGcGCCGCCg -3'
miRNA:   3'- -GGuaCGACaaGUauuUGACcUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 37807 0.68 0.999628
Target:  5'- aCCcgGCUuaaaGcUCucgGAGCgGGACCACCc -3'
miRNA:   3'- -GGuaCGA----CaAGua-UUUGaCCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 41390 0.67 0.999769
Target:  5'- --cUGCUGUUUcUGAGgUGGGCCugauguCCg -3'
miRNA:   3'- gguACGACAAGuAUUUgACCUGGu-----GG- -5'
29141 3' -46.9 NC_006146.1 + 47414 0.71 0.995468
Target:  5'- gCCAUGCUGaugaccaccgUUAggauggagGAGCUGGGgCACCu -3'
miRNA:   3'- -GGUACGACa---------AGUa-------UUUGACCUgGUGG- -5'
29141 3' -46.9 NC_006146.1 + 47434 0.74 0.95867
Target:  5'- uCCAUGCcGUcCAUGGAguuCUGGGCCAUg -3'
miRNA:   3'- -GGUACGaCAaGUAUUU---GACCUGGUGg -5'
29141 3' -46.9 NC_006146.1 + 47809 0.69 0.998392
Target:  5'- cCCAccGCcGUcUCAUGGGCUcGGGCUGCCa -3'
miRNA:   3'- -GGUa-CGaCA-AGUAUUUGA-CCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 52109 0.66 0.999938
Target:  5'- gCCAU-CUGUUCcccgucGCUGGAC-ACCa -3'
miRNA:   3'- -GGUAcGACAAGuauu--UGACCUGgUGG- -5'
29141 3' -46.9 NC_006146.1 + 52434 0.71 0.991772
Target:  5'- aUAUGUaGaggAUGAACUGGGCCACCc -3'
miRNA:   3'- gGUACGaCaagUAUUUGACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 52471 0.67 0.999893
Target:  5'- gCCGUGCaGgaccUCGgccagGGACUGGACgACg -3'
miRNA:   3'- -GGUACGaCa---AGUa----UUUGACCUGgUGg -5'
29141 3' -46.9 NC_006146.1 + 52595 0.72 0.99055
Target:  5'- aCCGaGCUGggCAcguccgucAGCUGGGCCAUCu -3'
miRNA:   3'- -GGUaCGACaaGUau------UUGACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 56309 0.75 0.954691
Target:  5'- gCCGUGCUGgacgaaGUGAGCgUGGACaGCCu -3'
miRNA:   3'- -GGUACGACaag---UAUUUG-ACCUGgUGG- -5'
29141 3' -46.9 NC_006146.1 + 59134 0.66 0.999962
Target:  5'- uCUGUGUUGUUgcgagaaaaugggcCAUGAcaaGGGCCACCa -3'
miRNA:   3'- -GGUACGACAA--------------GUAUUugaCCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 60580 0.68 0.999705
Target:  5'- aCAUGCUGUUUGacggGGACaGGGCgGCg -3'
miRNA:   3'- gGUACGACAAGUa---UUUGaCCUGgUGg -5'
29141 3' -46.9 NC_006146.1 + 75318 0.66 0.999918
Target:  5'- uUCAUGCUGaaCAUGAcCUcGGA-CGCCu -3'
miRNA:   3'- -GGUACGACaaGUAUUuGA-CCUgGUGG- -5'
29141 3' -46.9 NC_006146.1 + 77949 0.66 0.999938
Target:  5'- ---cGCUGUUUGgu--CUGGGCCggaGCCg -3'
miRNA:   3'- gguaCGACAAGUauuuGACCUGG---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.