miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29141 3' -46.9 NC_006146.1 + 166072 0.72 0.984182
Target:  5'- uCCAUGCUGcUgGUGugcuGCUGGugUGCUg -3'
miRNA:   3'- -GGUACGACaAgUAUu---UGACCugGUGG- -5'
29141 3' -46.9 NC_006146.1 + 158471 1.16 0.010515
Target:  5'- gCCAUGCUGUUCAUAAACUGGACCACCu -3'
miRNA:   3'- -GGUACGACAAGUAUUUGACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 156627 0.68 0.999532
Target:  5'- aCGggGCUGa--GUGGACUGGGCCucuuCCu -3'
miRNA:   3'- gGUa-CGACaagUAUUUGACCUGGu---GG- -5'
29141 3' -46.9 NC_006146.1 + 156105 0.7 0.997238
Target:  5'- -gAUGCUGccagaaAUAGuuGCUGGGCCACUu -3'
miRNA:   3'- ggUACGACaag---UAUU--UGACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 153549 0.68 0.999532
Target:  5'- aCGggGCUGa--GUGGACUGGGCCucuuCCu -3'
miRNA:   3'- gGUa-CGACaagUAUUUGACCUGGu---GG- -5'
29141 3' -46.9 NC_006146.1 + 153027 0.7 0.997238
Target:  5'- -gAUGCUGccagaaAUAGuuGCUGGGCCACUu -3'
miRNA:   3'- ggUACGACaag---UAUU--UGACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 152659 0.68 0.999628
Target:  5'- cCCAgGCUGUcCAUGAGCUcccccaGGCCGuCCa -3'
miRNA:   3'- -GGUaCGACAaGUAUUUGAc-----CUGGU-GG- -5'
29141 3' -46.9 NC_006146.1 + 150471 0.68 0.999532
Target:  5'- aCGggGCUGa--GUGGACUGGGCCucuuCCu -3'
miRNA:   3'- gGUa-CGACaagUAUUUGACCUGGu---GG- -5'
29141 3' -46.9 NC_006146.1 + 149949 0.7 0.997238
Target:  5'- -gAUGCUGccagaaAUAGuuGCUGGGCCACUu -3'
miRNA:   3'- ggUACGACaag---UAUU--UGACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 147393 0.68 0.999532
Target:  5'- aCGggGCUGa--GUGGACUGGGCCucuuCCu -3'
miRNA:   3'- gGUa-CGACaagUAUUUGACCUGGu---GG- -5'
29141 3' -46.9 NC_006146.1 + 146871 0.7 0.997238
Target:  5'- -gAUGCUGccagaaAUAGuuGCUGGGCCACUu -3'
miRNA:   3'- ggUACGACaag---UAUU--UGACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 144315 0.68 0.999532
Target:  5'- aCGggGCUGa--GUGGACUGGGCCucuuCCu -3'
miRNA:   3'- gGUa-CGACaagUAUUUGACCUGGu---GG- -5'
29141 3' -46.9 NC_006146.1 + 143793 0.7 0.997238
Target:  5'- -gAUGCUGccagaaAUAGuuGCUGGGCCACUu -3'
miRNA:   3'- ggUACGACaag---UAUU--UGACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 141237 0.68 0.999532
Target:  5'- aCGggGCUGa--GUGGACUGGGCCucuuCCu -3'
miRNA:   3'- gGUa-CGACaagUAUUUGACCUGGu---GG- -5'
29141 3' -46.9 NC_006146.1 + 138857 0.68 0.999628
Target:  5'- gCCAcGCccgGgUCAUGAcCUGGGCCAgCg -3'
miRNA:   3'- -GGUaCGa--CaAGUAUUuGACCUGGUgG- -5'
29141 3' -46.9 NC_006146.1 + 136859 0.66 0.999954
Target:  5'- cCCcgGCcgg-CAUAGGCcccgGGACCACg -3'
miRNA:   3'- -GGuaCGacaaGUAUUUGa---CCUGGUGg -5'
29141 3' -46.9 NC_006146.1 + 128598 0.72 0.99055
Target:  5'- aCcgGCUGUacuuUCuggcGCUGGGCUACCu -3'
miRNA:   3'- gGuaCGACA----AGuauuUGACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 127387 0.69 0.998392
Target:  5'- cUCGUGgaGgugUCuugGGGCUGGGCCccGCCg -3'
miRNA:   3'- -GGUACgaCa--AGua-UUUGACCUGG--UGG- -5'
29141 3' -46.9 NC_006146.1 + 124075 0.67 0.999769
Target:  5'- --uUGCcGUUgAUGGACaGGGCCACg -3'
miRNA:   3'- gguACGaCAAgUAUUUGaCCUGGUGg -5'
29141 3' -46.9 NC_006146.1 + 122814 0.66 0.999936
Target:  5'- gCCGcGCUGUcggccgcCGUGAGCgaguacgUGGACCGCa -3'
miRNA:   3'- -GGUaCGACAa------GUAUUUG-------ACCUGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.