miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29141 3' -46.9 NC_006146.1 + 158471 1.16 0.010515
Target:  5'- gCCAUGCUGUUCAUAAACUGGACCACCu -3'
miRNA:   3'- -GGUACGACAAGUAUUUGACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 56309 0.75 0.954691
Target:  5'- gCCGUGCUGgacgaaGUGAGCgUGGACaGCCu -3'
miRNA:   3'- -GGUACGACaag---UAUUUG-ACCUGgUGG- -5'
29141 3' -46.9 NC_006146.1 + 47434 0.74 0.95867
Target:  5'- uCCAUGCcGUcCAUGGAguuCUGGGCCAUg -3'
miRNA:   3'- -GGUACGaCAaGUAUUU---GACCUGGUGg -5'
29141 3' -46.9 NC_006146.1 + 92910 0.74 0.962402
Target:  5'- cCCGUGCUGUcCAgacAGAgaGGACCGgCa -3'
miRNA:   3'- -GGUACGACAaGUa--UUUgaCCUGGUgG- -5'
29141 3' -46.9 NC_006146.1 + 113658 0.74 0.969151
Target:  5'- gCCuUGCUGacCAcGGGCccgUGGACCACCg -3'
miRNA:   3'- -GGuACGACaaGUaUUUG---ACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 166072 0.72 0.984182
Target:  5'- uCCAUGCUGcUgGUGugcuGCUGGugUGCUg -3'
miRNA:   3'- -GGUACGACaAgUAUu---UGACCugGUGG- -5'
29141 3' -46.9 NC_006146.1 + 128598 0.72 0.99055
Target:  5'- aCcgGCUGUacuuUCuggcGCUGGGCUACCu -3'
miRNA:   3'- gGuaCGACA----AGuauuUGACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 52595 0.72 0.99055
Target:  5'- aCCGaGCUGggCAcguccgucAGCUGGGCCAUCu -3'
miRNA:   3'- -GGUaCGACaaGUau------UUGACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 52434 0.71 0.991772
Target:  5'- aUAUGUaGaggAUGAACUGGGCCACCc -3'
miRNA:   3'- gGUACGaCaagUAUUUGACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 24445 0.71 0.992865
Target:  5'- -gGUGCUGcgcccgCGU-GugUGGACCGCCc -3'
miRNA:   3'- ggUACGACaa----GUAuUugACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 33289 0.71 0.99384
Target:  5'- gCCcgGCUGggCAcc-GCUGcGCCGCCg -3'
miRNA:   3'- -GGuaCGACaaGUauuUGACcUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 94012 0.71 0.994704
Target:  5'- aCAUGCUa-UCAUAGGCagcgUGGACUACUu -3'
miRNA:   3'- gGUACGAcaAGUAUUUG----ACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 47414 0.71 0.995468
Target:  5'- gCCAUGCUGaugaccaccgUUAggauggagGAGCUGGGgCACCu -3'
miRNA:   3'- -GGUACGACa---------AGUa-------UUUGACCUgGUGG- -5'
29141 3' -46.9 NC_006146.1 + 88807 0.71 0.995468
Target:  5'- gCC-UGCUGggCAUGuuuGGCUGGGCCugaggcuCCc -3'
miRNA:   3'- -GGuACGACaaGUAU---UUGACCUGGu------GG- -5'
29141 3' -46.9 NC_006146.1 + 100926 0.7 0.995881
Target:  5'- aCCGUGCUGUUCuUGGccauccucaagcuCUGGuCCAUCc -3'
miRNA:   3'- -GGUACGACAAGuAUUu------------GACCuGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 156105 0.7 0.997238
Target:  5'- -gAUGCUGccagaaAUAGuuGCUGGGCCACUu -3'
miRNA:   3'- ggUACGACaag---UAUU--UGACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 143793 0.7 0.997238
Target:  5'- -gAUGCUGccagaaAUAGuuGCUGGGCCACUu -3'
miRNA:   3'- ggUACGACaag---UAUU--UGACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 146871 0.7 0.997238
Target:  5'- -gAUGCUGccagaaAUAGuuGCUGGGCCACUu -3'
miRNA:   3'- ggUACGACaag---UAUU--UGACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 149949 0.7 0.997238
Target:  5'- -gAUGCUGccagaaAUAGuuGCUGGGCCACUu -3'
miRNA:   3'- ggUACGACaag---UAUU--UGACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 153027 0.7 0.997238
Target:  5'- -gAUGCUGccagaaAUAGuuGCUGGGCCACUu -3'
miRNA:   3'- ggUACGACaag---UAUU--UGACCUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.