miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29141 3' -46.9 NC_006146.1 + 158471 1.16 0.010515
Target:  5'- gCCAUGCUGUUCAUAAACUGGACCACCu -3'
miRNA:   3'- -GGUACGACAAGUAUUUGACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 41390 0.67 0.999769
Target:  5'- --cUGCUGUUUcUGAGgUGGGCCugauguCCg -3'
miRNA:   3'- gguACGACAAGuAUUUgACCUGGu-----GG- -5'
29141 3' -46.9 NC_006146.1 + 96007 0.67 0.999769
Target:  5'- aCGaGC-GUUaCGUGGACUGGaucuguGCCACCg -3'
miRNA:   3'- gGUaCGaCAA-GUAUUUGACC------UGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 116642 0.66 0.999975
Target:  5'- aCCAUacaUGgcCAcAAACUGGGCgGCCa -3'
miRNA:   3'- -GGUAcg-ACaaGUaUUUGACCUGgUGG- -5'
29141 3' -46.9 NC_006146.1 + 52595 0.72 0.99055
Target:  5'- aCCGaGCUGggCAcguccgucAGCUGGGCCAUCu -3'
miRNA:   3'- -GGUaCGACaaGUau------UUGACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 128598 0.72 0.99055
Target:  5'- aCcgGCUGUacuuUCuggcGCUGGGCUACCu -3'
miRNA:   3'- gGuaCGACA----AGuauuUGACCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 33289 0.71 0.99384
Target:  5'- gCCcgGCUGggCAcc-GCUGcGCCGCCg -3'
miRNA:   3'- -GGuaCGACaaGUauuUGACcUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 100926 0.7 0.995881
Target:  5'- aCCGUGCUGUUCuUGGccauccucaagcuCUGGuCCAUCc -3'
miRNA:   3'- -GGUACGACAAGuAUUu------------GACCuGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 47809 0.69 0.998392
Target:  5'- cCCAccGCcGUcUCAUGGGCUcGGGCUGCCa -3'
miRNA:   3'- -GGUa-CGaCA-AGUAUUUGA-CCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 60580 0.68 0.999705
Target:  5'- aCAUGCUGUUUGacggGGACaGGGCgGCg -3'
miRNA:   3'- gGUACGACAAGUa---UUUGaCCUGgUGg -5'
29141 3' -46.9 NC_006146.1 + 138857 0.68 0.999628
Target:  5'- gCCAcGCccgGgUCAUGAcCUGGGCCAgCg -3'
miRNA:   3'- -GGUaCGa--CaAGUAUUuGACCUGGUgG- -5'
29141 3' -46.9 NC_006146.1 + 117560 0.7 0.997238
Target:  5'- uUCAgGCUGUUCAggguaUGGGCCGgCg -3'
miRNA:   3'- -GGUaCGACAAGUauuugACCUGGUgG- -5'
29141 3' -46.9 NC_006146.1 + 47434 0.74 0.95867
Target:  5'- uCCAUGCcGUcCAUGGAguuCUGGGCCAUg -3'
miRNA:   3'- -GGUACGaCAaGUAUUU---GACCUGGUGg -5'
29141 3' -46.9 NC_006146.1 + 113576 0.68 0.999628
Target:  5'- uCCAUGCUGacccUCGggagAGGCcGGGUCGCCa -3'
miRNA:   3'- -GGUACGACa---AGUa---UUUGaCCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 92910 0.74 0.962402
Target:  5'- cCCGUGCUGUcCAgacAGAgaGGACCGgCa -3'
miRNA:   3'- -GGUACGACAaGUa--UUUgaCCUGGUgG- -5'
29141 3' -46.9 NC_006146.1 + 32230 0.7 0.997238
Target:  5'- cCCAUGCUcUUCccagaAGACUGGuauccucCCACCa -3'
miRNA:   3'- -GGUACGAcAAGua---UUUGACCu------GGUGG- -5'
29141 3' -46.9 NC_006146.1 + 152659 0.68 0.999628
Target:  5'- cCCAgGCUGUcCAUGAGCUcccccaGGCCGuCCa -3'
miRNA:   3'- -GGUaCGACAaGUAUUUGAc-----CUGGU-GG- -5'
29141 3' -46.9 NC_006146.1 + 124075 0.67 0.999769
Target:  5'- --uUGCcGUUgAUGGACaGGGCCACg -3'
miRNA:   3'- gguACGaCAAgUAUUUGaCCUGGUGg -5'
29141 3' -46.9 NC_006146.1 + 166072 0.72 0.984182
Target:  5'- uCCAUGCUGcUgGUGugcuGCUGGugUGCUg -3'
miRNA:   3'- -GGUACGACaAgUAUu---UGACCugGUGG- -5'
29141 3' -46.9 NC_006146.1 + 52434 0.71 0.991772
Target:  5'- aUAUGUaGaggAUGAACUGGGCCACCc -3'
miRNA:   3'- gGUACGaCaagUAUUUGACCUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.