miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29141 3' -46.9 NC_006146.1 + 127387 0.69 0.998392
Target:  5'- cUCGUGgaGgugUCuugGGGCUGGGCCccGCCg -3'
miRNA:   3'- -GGUACgaCa--AGua-UUUGACCUGG--UGG- -5'
29141 3' -46.9 NC_006146.1 + 153549 0.68 0.999532
Target:  5'- aCGggGCUGa--GUGGACUGGGCCucuuCCu -3'
miRNA:   3'- gGUa-CGACaagUAUUUGACCUGGu---GG- -5'
29141 3' -46.9 NC_006146.1 + 150471 0.68 0.999532
Target:  5'- aCGggGCUGa--GUGGACUGGGCCucuuCCu -3'
miRNA:   3'- gGUa-CGACaagUAUUUGACCUGGu---GG- -5'
29141 3' -46.9 NC_006146.1 + 147393 0.68 0.999532
Target:  5'- aCGggGCUGa--GUGGACUGGGCCucuuCCu -3'
miRNA:   3'- gGUa-CGACaagUAUUUGACCUGGu---GG- -5'
29141 3' -46.9 NC_006146.1 + 144315 0.68 0.999532
Target:  5'- aCGggGCUGa--GUGGACUGGGCCucuuCCu -3'
miRNA:   3'- gGUa-CGACaagUAUUUGACCUGGu---GG- -5'
29141 3' -46.9 NC_006146.1 + 141237 0.68 0.999532
Target:  5'- aCGggGCUGa--GUGGACUGGGCCucuuCCu -3'
miRNA:   3'- gGUa-CGACaagUAUUUGACCUGGu---GG- -5'
29141 3' -46.9 NC_006146.1 + 99708 0.68 0.999532
Target:  5'- gCCccGCUGgaCuucuACUGGcCCACCg -3'
miRNA:   3'- -GGuaCGACaaGuauuUGACCuGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 24209 0.68 0.999417
Target:  5'- gCC-UGCgagGUUCuguugGGGCcgGGGCCGCCc -3'
miRNA:   3'- -GGuACGa--CAAGua---UUUGa-CCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 14160 0.69 0.998887
Target:  5'- gCCGUggaGCUGagCGUcugcgccAGGCUGGACCcCCg -3'
miRNA:   3'- -GGUA---CGACaaGUA-------UUUGACCUGGuGG- -5'
29141 3' -46.9 NC_006146.1 + 156627 0.68 0.999532
Target:  5'- aCGggGCUGa--GUGGACUGGGCCucuuCCu -3'
miRNA:   3'- gGUa-CGACaagUAUUUGACCUGGu---GG- -5'
29141 3' -46.9 NC_006146.1 + 37807 0.68 0.999628
Target:  5'- aCCcgGCUuaaaGcUCucgGAGCgGGACCACCc -3'
miRNA:   3'- -GGuaCGA----CaAGua-UUUGaCCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 84371 0.67 0.999769
Target:  5'- -gGUGCUaggCGUGGACcGGGCgGCCa -3'
miRNA:   3'- ggUACGAcaaGUAUUUGaCCUGgUGG- -5'
29141 3' -46.9 NC_006146.1 + 121346 0.66 0.999966
Target:  5'- gCCAUGCUGggCcUGgccGGCgUGGccuCCGCCc -3'
miRNA:   3'- -GGUACGACaaGuAU---UUG-ACCu--GGUGG- -5'
29141 3' -46.9 NC_006146.1 + 59134 0.66 0.999962
Target:  5'- uCUGUGUUGUUgcgagaaaaugggcCAUGAcaaGGGCCACCa -3'
miRNA:   3'- -GGUACGACAA--------------GUAUUugaCCUGGUGG- -5'
29141 3' -46.9 NC_006146.1 + 136859 0.66 0.999954
Target:  5'- cCCcgGCcgg-CAUAGGCcccgGGACCACg -3'
miRNA:   3'- -GGuaCGacaaGUAUUUGa---CCUGGUGg -5'
29141 3' -46.9 NC_006146.1 + 77949 0.66 0.999938
Target:  5'- ---cGCUGUUUGgu--CUGGGCCggaGCCg -3'
miRNA:   3'- gguaCGACAAGUauuuGACCUGG---UGG- -5'
29141 3' -46.9 NC_006146.1 + 118013 0.66 0.999938
Target:  5'- aCCAUGCgGggCucgGGGCgcgcgaGGACCACg -3'
miRNA:   3'- -GGUACGaCaaGua-UUUGa-----CCUGGUGg -5'
29141 3' -46.9 NC_006146.1 + 122814 0.66 0.999936
Target:  5'- gCCGcGCUGUcggccgcCGUGAGCgaguacgUGGACCGCa -3'
miRNA:   3'- -GGUaCGACAa------GUAUUUG-------ACCUGGUGg -5'
29141 3' -46.9 NC_006146.1 + 75318 0.66 0.999918
Target:  5'- uUCAUGCUGaaCAUGAcCUcGGA-CGCCu -3'
miRNA:   3'- -GGUACGACaaGUAUUuGA-CCUgGUGG- -5'
29141 3' -46.9 NC_006146.1 + 10810 0.67 0.99986
Target:  5'- gCCAcGCUGggCAccGGCUacacGGGCCACa -3'
miRNA:   3'- -GGUaCGACaaGUauUUGA----CCUGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.