Results 41 - 60 of 88 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29141 | 5' | -56.7 | NC_006146.1 | + | 101703 | 0.67 | 0.894222 |
Target: 5'- uCCGCCcaaGcCCACGUCCCcuccguuuuaccuaUG-ACAUCa -3' miRNA: 3'- -GGCGGcg-CaGGUGCAGGG--------------ACuUGUAG- -5' |
|||||||
29141 | 5' | -56.7 | NC_006146.1 | + | 102718 | 0.73 | 0.583162 |
Target: 5'- gCCGCUGCGcCCGCGUCCU--GACGc- -3' miRNA: 3'- -GGCGGCGCaGGUGCAGGGacUUGUag -5' |
|||||||
29141 | 5' | -56.7 | NC_006146.1 | + | 103124 | 0.69 | 0.79625 |
Target: 5'- gCCGCCGU---CACGUCCCUGGcCGa- -3' miRNA: 3'- -GGCGGCGcagGUGCAGGGACUuGUag -5' |
|||||||
29141 | 5' | -56.7 | NC_006146.1 | + | 111622 | 0.66 | 0.920475 |
Target: 5'- aCUGCCaGCccagGUCCGCGaagacgucggccaggCCCUGAACAc- -3' miRNA: 3'- -GGCGG-CG----CAGGUGCa--------------GGGACUUGUag -5' |
|||||||
29141 | 5' | -56.7 | NC_006146.1 | + | 114141 | 0.67 | 0.889649 |
Target: 5'- cCUGCgCGUGcUCCGCGaucaggCCCcGGACGUCc -3' miRNA: 3'- -GGCG-GCGC-AGGUGCa-----GGGaCUUGUAG- -5' |
|||||||
29141 | 5' | -56.7 | NC_006146.1 | + | 115720 | 0.72 | 0.638995 |
Target: 5'- cCCGCCGCGgccgcagCCugGgacgcggucacccCCCUGcGCAUCu -3' miRNA: 3'- -GGCGGCGCa------GGugCa------------GGGACuUGUAG- -5' |
|||||||
29141 | 5' | -56.7 | NC_006146.1 | + | 118418 | 0.7 | 0.741162 |
Target: 5'- uCgGCCGuCGUCCA-GUCCCUGGccgAgGUCc -3' miRNA: 3'- -GgCGGC-GCAGGUgCAGGGACU---UgUAG- -5' |
|||||||
29141 | 5' | -56.7 | NC_006146.1 | + | 123057 | 0.67 | 0.876005 |
Target: 5'- aCGCCGgGUCCagggacGCGUCCUgcgGGGCc-- -3' miRNA: 3'- gGCGGCgCAGG------UGCAGGGa--CUUGuag -5' |
|||||||
29141 | 5' | -56.7 | NC_006146.1 | + | 131140 | 0.75 | 0.468258 |
Target: 5'- cCUGCCGCGUCUGCGaUCUgCUGGACAc- -3' miRNA: 3'- -GGCGGCGCAGGUGC-AGG-GACUUGUag -5' |
|||||||
29141 | 5' | -56.7 | NC_006146.1 | + | 135152 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
|||||||
29141 | 5' | -56.7 | NC_006146.1 | + | 135245 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
|||||||
29141 | 5' | -56.7 | NC_006146.1 | + | 135338 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
|||||||
29141 | 5' | -56.7 | NC_006146.1 | + | 135431 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
|||||||
29141 | 5' | -56.7 | NC_006146.1 | + | 135524 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
|||||||
29141 | 5' | -56.7 | NC_006146.1 | + | 135617 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
|||||||
29141 | 5' | -56.7 | NC_006146.1 | + | 135710 | 0.69 | 0.778364 |
Target: 5'- gCUGCCGgGUCCGCugcccGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG-----CAGGGaCUUGuAG- -5' |
|||||||
29141 | 5' | -56.7 | NC_006146.1 | + | 135802 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
|||||||
29141 | 5' | -56.7 | NC_006146.1 | + | 135895 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
|||||||
29141 | 5' | -56.7 | NC_006146.1 | + | 135988 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
|||||||
29141 | 5' | -56.7 | NC_006146.1 | + | 136081 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home