miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29141 5' -56.7 NC_006146.1 + 47840 0.68 0.838354
Target:  5'- gCC-CCGCaggaCGCGUCCCUGGacccgGCGUCu -3'
miRNA:   3'- -GGcGGCGcag-GUGCAGGGACU-----UGUAG- -5'
29141 5' -56.7 NC_006146.1 + 48703 0.66 0.902429
Target:  5'- cCCGCCGCuccGUCCGC-UCUCUG-GCcUCc -3'
miRNA:   3'- -GGCGGCG---CAGGUGcAGGGACuUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 49921 0.71 0.692682
Target:  5'- gCCGCCGaggCCACucgGUCCC-GGACGUCc -3'
miRNA:   3'- -GGCGGCgcaGGUG---CAGGGaCUUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 50539 0.68 0.821999
Target:  5'- -aGCCGC-UCCAgGUCCCgggUGGGCAc- -3'
miRNA:   3'- ggCGGCGcAGGUgCAGGG---ACUUGUag -5'
29141 5' -56.7 NC_006146.1 + 52645 0.68 0.845484
Target:  5'- gCCGCUcuggcgcaugaggGCGUCCAgccucgcccccuCGUCCa-GGACAUCg -3'
miRNA:   3'- -GGCGG-------------CGCAGGU------------GCAGGgaCUUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 54076 0.78 0.328313
Target:  5'- gCCGCCGCGUCCcggcacACGUCC-UGGACGc- -3'
miRNA:   3'- -GGCGGCGCAGG------UGCAGGgACUUGUag -5'
29141 5' -56.7 NC_006146.1 + 54465 0.68 0.846267
Target:  5'- gCGaaCCGCGUCCAUGaUCCUcagGAugGCGUCg -3'
miRNA:   3'- gGC--GGCGCAGGUGC-AGGGa--CU--UGUAG- -5'
29141 5' -56.7 NC_006146.1 + 57158 0.67 0.892275
Target:  5'- aCCGCCGCuUCCACGccuuccucaccccagUgggccCCCUGGuggagaACAUCa -3'
miRNA:   3'- -GGCGGCGcAGGUGC---------------A-----GGGACU------UGUAG- -5'
29141 5' -56.7 NC_006146.1 + 63330 0.68 0.821163
Target:  5'- aCCGCCGUGgcgguguauuucuUCCACGaagCCCUGGGa--- -3'
miRNA:   3'- -GGCGGCGC-------------AGGUGCa--GGGACUUguag -5'
29141 5' -56.7 NC_006146.1 + 68713 0.7 0.721982
Target:  5'- aCGCCGU--CCGCGUCCCcgaGAGCuGUCg -3'
miRNA:   3'- gGCGGCGcaGGUGCAGGGa--CUUG-UAG- -5'
29141 5' -56.7 NC_006146.1 + 71164 0.7 0.731613
Target:  5'- uCCGauGgGUCCGCGUCCUcgGAGCAc- -3'
miRNA:   3'- -GGCggCgCAGGUGCAGGGa-CUUGUag -5'
29141 5' -56.7 NC_006146.1 + 75303 0.7 0.75062
Target:  5'- aCGCUcuCGUCCACGUUCaugCUGAACAUg -3'
miRNA:   3'- gGCGGc-GCAGGUGCAGG---GACUUGUAg -5'
29141 5' -56.7 NC_006146.1 + 75966 0.76 0.398427
Target:  5'- aCCGCaGCGgCCACGUCCCcu-GCAUCg -3'
miRNA:   3'- -GGCGgCGCaGGUGCAGGGacuUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 84643 0.66 0.919926
Target:  5'- gCGCCGUGcugcCCACGUgCCUGcu-GUCa -3'
miRNA:   3'- gGCGGCGCa---GGUGCAgGGACuugUAG- -5'
29141 5' -56.7 NC_006146.1 + 85520 0.66 0.919926
Target:  5'- aCGCCG-GUCCcggcuucugGCGUCUCcaccGGGCAUCu -3'
miRNA:   3'- gGCGGCgCAGG---------UGCAGGGa---CUUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 89294 0.66 0.91659
Target:  5'- uUCGCUGCccacauccuucucuuGUCC-CGUugcCCCUGuAGCAUCg -3'
miRNA:   3'- -GGCGGCG---------------CAGGuGCA---GGGAC-UUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 96863 0.66 0.919926
Target:  5'- uCUGCCGCGUCagcCG-CCgaGAcuGCAUCc -3'
miRNA:   3'- -GGCGGCGCAGgu-GCaGGgaCU--UGUAG- -5'
29141 5' -56.7 NC_006146.1 + 98723 0.74 0.496028
Target:  5'- gCCGCCGCGUCCuCGUcgaCCC---GCAUCu -3'
miRNA:   3'- -GGCGGCGCAGGuGCA---GGGacuUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 99149 0.67 0.861531
Target:  5'- -aGCCaGCGUCCAUuaGUCCCacuccaGGCGUCa -3'
miRNA:   3'- ggCGG-CGCAGGUG--CAGGGac----UUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 101098 0.7 0.741162
Target:  5'- uUCGCgGCccaUCACGUCCCacgUGGGCAUCa -3'
miRNA:   3'- -GGCGgCGca-GGUGCAGGG---ACUUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.