miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29141 5' -56.7 NC_006146.1 + 71164 0.7 0.731613
Target:  5'- uCCGauGgGUCCGCGUCCUcgGAGCAc- -3'
miRNA:   3'- -GGCggCgCAGGUGCAGGGa-CUUGUag -5'
29141 5' -56.7 NC_006146.1 + 118418 0.7 0.741162
Target:  5'- uCgGCCGuCGUCCA-GUCCCUGGccgAgGUCc -3'
miRNA:   3'- -GgCGGC-GCAGGUgCAGGGACU---UgUAG- -5'
29141 5' -56.7 NC_006146.1 + 101098 0.7 0.741162
Target:  5'- uUCGCgGCccaUCACGUCCCacgUGGGCAUCa -3'
miRNA:   3'- -GGCGgCGca-GGUGCAGGG---ACUUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 75303 0.7 0.75062
Target:  5'- aCGCUcuCGUCCACGUUCaugCUGAACAUg -3'
miRNA:   3'- gGCGGc-GCAGGUGCAGG---GACUUGUAg -5'
29141 5' -56.7 NC_006146.1 + 135710 0.69 0.778364
Target:  5'- gCUGCCGgGUCCGCugcccGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG-----CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 158131 0.69 0.778364
Target:  5'- -gGCCGCGUCCAgGUCCg-GcAgGUCa -3'
miRNA:   3'- ggCGGCGCAGGUgCAGGgaCuUgUAG- -5'
29141 5' -56.7 NC_006146.1 + 145495 0.69 0.79625
Target:  5'- uCCGgCGUGUCCACGgagaCUCUG-ACGUa -3'
miRNA:   3'- -GGCgGCGCAGGUGCa---GGGACuUGUAg -5'
29141 5' -56.7 NC_006146.1 + 166549 0.69 0.79625
Target:  5'- -gGCCGUGgCCACGUCgCUGAAgAg- -3'
miRNA:   3'- ggCGGCGCaGGUGCAGgGACUUgUag -5'
29141 5' -56.7 NC_006146.1 + 103124 0.69 0.79625
Target:  5'- gCCGCCGU---CACGUCCCUGGcCGa- -3'
miRNA:   3'- -GGCGGCGcagGUGCAGGGACUuGUag -5'
29141 5' -56.7 NC_006146.1 + 33947 0.69 0.804984
Target:  5'- uCCGCUGgGUCCGCugGUCCgggUGGGCGUg -3'
miRNA:   3'- -GGCGGCgCAGGUG--CAGGg--ACUUGUAg -5'
29141 5' -56.7 NC_006146.1 + 33761 0.69 0.804984
Target:  5'- uCCGCUGgGUCCGCugGUCCgggUGGGCGUg -3'
miRNA:   3'- -GGCGGCgCAGGUG--CAGGg--ACUUGUAg -5'
29141 5' -56.7 NC_006146.1 + 135338 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 135988 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 135895 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 135802 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 135524 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 135617 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 135152 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 135245 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 135431 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.