miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29141 5' -56.7 NC_006146.1 + 54465 0.68 0.846267
Target:  5'- gCGaaCCGCGUCCAUGaUCCUcagGAugGCGUCg -3'
miRNA:   3'- gGC--GGCGCAGGUGC-AGGGa--CU--UGUAG- -5'
29141 5' -56.7 NC_006146.1 + 52645 0.68 0.845484
Target:  5'- gCCGCUcuggcgcaugaggGCGUCCAgccucgcccccuCGUCCa-GGACAUCg -3'
miRNA:   3'- -GGCGG-------------CGCAGGU------------GCAGGgaCUUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 47840 0.68 0.838354
Target:  5'- gCC-CCGCaggaCGCGUCCCUGGacccgGCGUCu -3'
miRNA:   3'- -GGcGGCGcag-GUGCAGGGACU-----UGUAG- -5'
29141 5' -56.7 NC_006146.1 + 50539 0.68 0.821999
Target:  5'- -aGCCGC-UCCAgGUCCCgggUGGGCAc- -3'
miRNA:   3'- ggCGGCGcAGGUgCAGGG---ACUUGUag -5'
29141 5' -56.7 NC_006146.1 + 63330 0.68 0.821163
Target:  5'- aCCGCCGUGgcgguguauuucuUCCACGaagCCCUGGGa--- -3'
miRNA:   3'- -GGCGGCGC-------------AGGUGCa--GGGACUUguag -5'
29141 5' -56.7 NC_006146.1 + 136546 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 12332 0.68 0.81357
Target:  5'- cCCGCCucaGUCCccuCGcCCCUGGGCcUCa -3'
miRNA:   3'- -GGCGGcg-CAGGu--GCaGGGACUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 135802 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 137568 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 137196 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 137382 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 137475 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 135524 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 135895 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 136081 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 135988 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 135431 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 135338 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 135152 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 135245 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.