miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29141 5' -56.7 NC_006146.1 + 136081 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 135988 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 136917 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 135152 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 27723 0.68 0.81357
Target:  5'- cCCGCCucaGUCCccuCGcCCCUGGGCcUCa -3'
miRNA:   3'- -GGCGGcg-CAGGu--GCaGGGACUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 12332 0.68 0.81357
Target:  5'- cCCGCCucaGUCCccuCGcCCCUGGGCcUCa -3'
miRNA:   3'- -GGCGGcg-CAGGu--GCaGGGACUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 137475 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 137196 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 137103 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 137289 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 137382 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 137568 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 18489 0.68 0.81357
Target:  5'- cCCGCCucaGUCCccuCGcCCCUGGGCcUCa -3'
miRNA:   3'- -GGCGGcg-CAGGu--GCaGGGACUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 21567 0.68 0.81357
Target:  5'- cCCGCCucaGUCCccuCGcCCCUGGGCcUCa -3'
miRNA:   3'- -GGCGGcg-CAGGu--GCaGGGACUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 24645 0.68 0.81357
Target:  5'- cCCGCCucaGUCCccuCGcCCCUGGGCcUCa -3'
miRNA:   3'- -GGCGGcg-CAGGu--GCaGGGACUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 15411 0.68 0.81357
Target:  5'- cCCGCCucaGUCCccuCGcCCCUGGGCcUCa -3'
miRNA:   3'- -GGCGGcg-CAGGu--GCaGGGACUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 137010 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 33761 0.69 0.804984
Target:  5'- uCCGCUGgGUCCGCugGUCCgggUGGGCGUg -3'
miRNA:   3'- -GGCGGCgCAGGUG--CAGGg--ACUUGUAg -5'
29141 5' -56.7 NC_006146.1 + 33947 0.69 0.804984
Target:  5'- uCCGCUGgGUCCGCugGUCCgggUGGGCGUg -3'
miRNA:   3'- -GGCGGCgCAGGUG--CAGGg--ACUUGUAg -5'
29141 5' -56.7 NC_006146.1 + 103124 0.69 0.79625
Target:  5'- gCCGCCGU---CACGUCCCUGGcCGa- -3'
miRNA:   3'- -GGCGGCGcagGUGCAGGGACUuGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.