miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29141 5' -56.7 NC_006146.1 + 3382 0.71 0.672893
Target:  5'- gCCGCgGCGUCCuACaggCCCUGaAGCGUg -3'
miRNA:   3'- -GGCGgCGCAGG-UGca-GGGAC-UUGUAg -5'
29141 5' -56.7 NC_006146.1 + 9467 0.71 0.682807
Target:  5'- gCGCgGgGUCCGCG-CCCUcuGGCAUCa -3'
miRNA:   3'- gGCGgCgCAGGUGCaGGGAc-UUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 12332 0.68 0.81357
Target:  5'- cCCGCCucaGUCCccuCGcCCCUGGGCcUCa -3'
miRNA:   3'- -GGCGGcg-CAGGu--GCaGGGACUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 15411 0.68 0.81357
Target:  5'- cCCGCCucaGUCCccuCGcCCCUGGGCcUCa -3'
miRNA:   3'- -GGCGGcg-CAGGu--GCaGGGACUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 18489 0.68 0.81357
Target:  5'- cCCGCCucaGUCCccuCGcCCCUGGGCcUCa -3'
miRNA:   3'- -GGCGGcg-CAGGu--GCaGGGACUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 21567 0.68 0.81357
Target:  5'- cCCGCCucaGUCCccuCGcCCCUGGGCcUCa -3'
miRNA:   3'- -GGCGGcg-CAGGu--GCaGGGACUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 23197 0.72 0.632998
Target:  5'- cCCGCCGCcuUCCugG-CCCUGuugcuCAUCc -3'
miRNA:   3'- -GGCGGCGc-AGGugCaGGGACuu---GUAG- -5'
29141 5' -56.7 NC_006146.1 + 24446 0.66 0.925305
Target:  5'- gUGCUGCGcCCGCGUgUgUGGACcgCc -3'
miRNA:   3'- gGCGGCGCaGGUGCAgGgACUUGuaG- -5'
29141 5' -56.7 NC_006146.1 + 24645 0.68 0.81357
Target:  5'- cCCGCCucaGUCCccuCGcCCCUGGGCcUCa -3'
miRNA:   3'- -GGCGGcg-CAGGu--GCaGGGACUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 25387 0.67 0.861531
Target:  5'- uCCGCCGCGgcaagggCUACGucagagucUCCgUGGACAc- -3'
miRNA:   3'- -GGCGGCGCa------GGUGC--------AGGgACUUGUag -5'
29141 5' -56.7 NC_006146.1 + 27723 0.68 0.81357
Target:  5'- cCCGCCucaGUCCccuCGcCCCUGGGCcUCa -3'
miRNA:   3'- -GGCGGcg-CAGGu--GCaGGGACUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 33177 0.71 0.682807
Target:  5'- aCCGCCGCGccgCCGCucggUCCUGGGCcUCc -3'
miRNA:   3'- -GGCGGCGCa--GGUGca--GGGACUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 33578 0.67 0.876005
Target:  5'- gUCGCCGCGUUCGCugGUCCgguuugggUGGGCGUg -3'
miRNA:   3'- -GGCGGCGCAGGUG--CAGGg-------ACUUGUAg -5'
29141 5' -56.7 NC_006146.1 + 33761 0.69 0.804984
Target:  5'- uCCGCUGgGUCCGCugGUCCgggUGGGCGUg -3'
miRNA:   3'- -GGCGGCgCAGGUG--CAGGg--ACUUGUAg -5'
29141 5' -56.7 NC_006146.1 + 33947 0.69 0.804984
Target:  5'- uCCGCUGgGUCCGCugGUCCgggUGGGCGUg -3'
miRNA:   3'- -GGCGGCgCAGGUG--CAGGg--ACUUGUAg -5'
29141 5' -56.7 NC_006146.1 + 39889 0.66 0.900568
Target:  5'- gCCGCCuccgGCuggcuuuugagauuGUCCACGUCCaggGGACAa- -3'
miRNA:   3'- -GGCGG----CG--------------CAGGUGCAGGga-CUUGUag -5'
29141 5' -56.7 NC_006146.1 + 40577 0.68 0.846267
Target:  5'- aCGCUGaugagGUCCugG-CCCUGGGCGg- -3'
miRNA:   3'- gGCGGCg----CAGGugCaGGGACUUGUag -5'
29141 5' -56.7 NC_006146.1 + 40978 0.66 0.925305
Target:  5'- aCCGCCGUGgugCCGCGccggcgcCCCaGGGCGc- -3'
miRNA:   3'- -GGCGGCGCa--GGUGCa------GGGaCUUGUag -5'
29141 5' -56.7 NC_006146.1 + 42711 0.67 0.889649
Target:  5'- gCGCCGCGg-CGCccCCCUGGGCcgCc -3'
miRNA:   3'- gGCGGCGCagGUGcaGGGACUUGuaG- -5'
29141 5' -56.7 NC_006146.1 + 44492 0.67 0.861531
Target:  5'- gUGCCGUGcUCGCGaCCCcGGGCGUCc -3'
miRNA:   3'- gGCGGCGCaGGUGCaGGGaCUUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.