miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29141 5' -56.7 NC_006146.1 + 158507 1.11 0.002277
Target:  5'- aCCGCCGCGUCCACGUCCCUGAACAUCu -3'
miRNA:   3'- -GGCGGCGCAGGUGCAGGGACUUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 33761 0.69 0.804984
Target:  5'- uCCGCUGgGUCCGCugGUCCgggUGGGCGUg -3'
miRNA:   3'- -GGCGGCgCAGGUG--CAGGg--ACUUGUAg -5'
29141 5' -56.7 NC_006146.1 + 135152 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 85520 0.66 0.919926
Target:  5'- aCGCCG-GUCCcggcuucugGCGUCUCcaccGGGCAUCu -3'
miRNA:   3'- gGCGGCgCAGG---------UGCAGGGa---CUUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 98723 0.74 0.496028
Target:  5'- gCCGCCGCGUCCuCGUcgaCCC---GCAUCu -3'
miRNA:   3'- -GGCGGCGCAGGuGCA---GGGacuUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 167231 0.72 0.631998
Target:  5'- cCCGucugcucCCGCGgCCA-GUCCCUGGAUGUCg -3'
miRNA:   3'- -GGC-------GGCGCaGGUgCAGGGACUUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 169095 0.72 0.631998
Target:  5'- cCCGucugcucCCGCGgCCA-GUCCCUGGAUGUCg -3'
miRNA:   3'- -GGC-------GGCGCaGGUgCAGGGACUUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 170027 0.72 0.631998
Target:  5'- cCCGucugcucCCGCGgCCA-GUCCCUGGAUGUCg -3'
miRNA:   3'- -GGC-------GGCGCaGGUgCAGGGACUUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 33177 0.71 0.682807
Target:  5'- aCCGCCGCGccgCCGCucggUCCUGGGCcUCc -3'
miRNA:   3'- -GGCGGCGCa--GGUGca--GGGACUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 145495 0.69 0.79625
Target:  5'- uCCGgCGUGUCCACGgagaCUCUG-ACGUa -3'
miRNA:   3'- -GGCgGCGCAGGUGCa---GGGACuUGUAg -5'
29141 5' -56.7 NC_006146.1 + 68713 0.7 0.721982
Target:  5'- aCGCCGU--CCGCGUCCCcgaGAGCuGUCg -3'
miRNA:   3'- gGCGGCGcaGGUGCAGGGa--CUUG-UAG- -5'
29141 5' -56.7 NC_006146.1 + 3382 0.71 0.672893
Target:  5'- gCCGCgGCGUCCuACaggCCCUGaAGCGUg -3'
miRNA:   3'- -GGCGgCGCAGG-UGca-GGGAC-UUGUAg -5'
29141 5' -56.7 NC_006146.1 + 54076 0.78 0.328313
Target:  5'- gCCGCCGCGUCCcggcacACGUCC-UGGACGc- -3'
miRNA:   3'- -GGCGGCGCAGG------UGCAGGgACUUGUag -5'
29141 5' -56.7 NC_006146.1 + 135710 0.69 0.778364
Target:  5'- gCUGCCGgGUCCGCugcccGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG-----CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 151471 0.76 0.398427
Target:  5'- gCGCCGCGUCCACGUUggCUUcGAAgAUCu -3'
miRNA:   3'- gGCGGCGCAGGUGCAG--GGA-CUUgUAG- -5'
29141 5' -56.7 NC_006146.1 + 139212 0.71 0.656967
Target:  5'- -aGCCGCGgucccccacccuucCCugGUCCCUGGGCu-- -3'
miRNA:   3'- ggCGGCGCa-------------GGugCAGGGACUUGuag -5'
29141 5' -56.7 NC_006146.1 + 158131 0.69 0.778364
Target:  5'- -gGCCGCGUCCAgGUCCg-GcAgGUCa -3'
miRNA:   3'- ggCGGCGCAGGUgCAGGgaCuUgUAG- -5'
29141 5' -56.7 NC_006146.1 + 33947 0.69 0.804984
Target:  5'- uCCGCUGgGUCCGCugGUCCgggUGGGCGUg -3'
miRNA:   3'- -GGCGGCgCAGGUG--CAGGg--ACUUGUAg -5'
29141 5' -56.7 NC_006146.1 + 165275 0.75 0.450195
Target:  5'- cCCGCCaUGgCCAUGUCCCUGGugAUUa -3'
miRNA:   3'- -GGCGGcGCaGGUGCAGGGACUugUAG- -5'
29141 5' -56.7 NC_006146.1 + 168163 0.72 0.631998
Target:  5'- cCCGucugcucCCGCGgCCA-GUCCCUGGAUGUCg -3'
miRNA:   3'- -GGC-------GGCGCaGGUgCAGGGACUUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.