miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29141 5' -56.7 NC_006146.1 + 102718 0.73 0.583162
Target:  5'- gCCGCUGCGcCCGCGUCCU--GACGc- -3'
miRNA:   3'- -GGCGGCGCaGGUGCAGGGacUUGUag -5'
29141 5' -56.7 NC_006146.1 + 103124 0.69 0.79625
Target:  5'- gCCGCCGU---CACGUCCCUGGcCGa- -3'
miRNA:   3'- -GGCGGCGcagGUGCAGGGACUuGUag -5'
29141 5' -56.7 NC_006146.1 + 75303 0.7 0.75062
Target:  5'- aCGCUcuCGUCCACGUUCaugCUGAACAUg -3'
miRNA:   3'- gGCGGc-GCAGGUGCAGG---GACUUGUAg -5'
29141 5' -56.7 NC_006146.1 + 118418 0.7 0.741162
Target:  5'- uCgGCCGuCGUCCA-GUCCCUGGccgAgGUCc -3'
miRNA:   3'- -GgCGGC-GCAGGUgCAGGGACU---UgUAG- -5'
29141 5' -56.7 NC_006146.1 + 101098 0.7 0.741162
Target:  5'- uUCGCgGCccaUCACGUCCCacgUGGGCAUCa -3'
miRNA:   3'- -GGCGgCGca-GGUGCAGGG---ACUUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 71164 0.7 0.731613
Target:  5'- uCCGauGgGUCCGCGUCCUcgGAGCAc- -3'
miRNA:   3'- -GGCggCgCAGGUGCAGGGa-CUUGUag -5'
29141 5' -56.7 NC_006146.1 + 9467 0.71 0.682807
Target:  5'- gCGCgGgGUCCGCG-CCCUcuGGCAUCa -3'
miRNA:   3'- gGCGgCgCAGGUGCaGGGAc-UUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 115720 0.72 0.638995
Target:  5'- cCCGCCGCGgccgcagCCugGgacgcggucacccCCCUGcGCAUCu -3'
miRNA:   3'- -GGCGGCGCa------GGugCa------------GGGACuUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 23197 0.72 0.632998
Target:  5'- cCCGCCGCcuUCCugG-CCCUGuugcuCAUCc -3'
miRNA:   3'- -GGCGGCGc-AGGugCaGGGACuu---GUAG- -5'
29141 5' -56.7 NC_006146.1 + 166549 0.69 0.79625
Target:  5'- -gGCCGUGgCCACGUCgCUGAAgAg- -3'
miRNA:   3'- ggCGGCGCaGGUGCAGgGACUUgUag -5'
29141 5' -56.7 NC_006146.1 + 47840 0.68 0.838354
Target:  5'- gCC-CCGCaggaCGCGUCCCUGGacccgGCGUCu -3'
miRNA:   3'- -GGcGGCGcag-GUGCAGGGACU-----UGUAG- -5'
29141 5' -56.7 NC_006146.1 + 40577 0.68 0.846267
Target:  5'- aCGCUGaugagGUCCugG-CCCUGGGCGg- -3'
miRNA:   3'- gGCGGCg----CAGGugCaGGGACUUGUag -5'
29141 5' -56.7 NC_006146.1 + 168122 0.66 0.925305
Target:  5'- gCGCCugGCGUCU---UCCCUG-ACAUCc -3'
miRNA:   3'- gGCGG--CGCAGGugcAGGGACuUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 24446 0.66 0.925305
Target:  5'- gUGCUGCGcCCGCGUgUgUGGACcgCc -3'
miRNA:   3'- gGCGGCGCaGGUGCAgGgACUUGuaG- -5'
29141 5' -56.7 NC_006146.1 + 111622 0.66 0.920475
Target:  5'- aCUGCCaGCccagGUCCGCGaagacgucggccaggCCCUGAACAc- -3'
miRNA:   3'- -GGCGG-CG----CAGGUGCa--------------GGGACUUGUag -5'
29141 5' -56.7 NC_006146.1 + 84643 0.66 0.919926
Target:  5'- gCGCCGUGcugcCCACGUgCCUGcu-GUCa -3'
miRNA:   3'- gGCGGCGCa---GGUGCAgGGACuugUAG- -5'
29141 5' -56.7 NC_006146.1 + 114141 0.67 0.889649
Target:  5'- cCUGCgCGUGcUCCGCGaucaggCCCcGGACGUCc -3'
miRNA:   3'- -GGCG-GCGC-AGGUGCa-----GGGaCUUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 42711 0.67 0.889649
Target:  5'- gCGCCGCGg-CGCccCCCUGGGCcgCc -3'
miRNA:   3'- gGCGGCGCagGUGcaGGGACUUGuaG- -5'
29141 5' -56.7 NC_006146.1 + 99149 0.67 0.861531
Target:  5'- -aGCCaGCGUCCAUuaGUCCCacuccaGGCGUCa -3'
miRNA:   3'- ggCGG-CGCAGGUG--CAGGGac----UUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 25387 0.67 0.861531
Target:  5'- uCCGCCGCGgcaagggCUACGucagagucUCCgUGGACAc- -3'
miRNA:   3'- -GGCGGCGCa------GGUGC--------AGGgACUUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.