Results 1 - 20 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29141 | 5' | -56.7 | NC_006146.1 | + | 170027 | 0.72 | 0.631998 |
Target: 5'- cCCGucugcucCCGCGgCCA-GUCCCUGGAUGUCg -3' miRNA: 3'- -GGC-------GGCGCaGGUgCAGGGACUUGUAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 169095 | 0.72 | 0.631998 |
Target: 5'- cCCGucugcucCCGCGgCCA-GUCCCUGGAUGUCg -3' miRNA: 3'- -GGC-------GGCGCaGGUgCAGGGACUUGUAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 168163 | 0.72 | 0.631998 |
Target: 5'- cCCGucugcucCCGCGgCCA-GUCCCUGGAUGUCg -3' miRNA: 3'- -GGC-------GGCGCaGGUgCAGGGACUUGUAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 168122 | 0.66 | 0.925305 |
Target: 5'- gCGCCugGCGUCU---UCCCUG-ACAUCc -3' miRNA: 3'- gGCGG--CGCAGGugcAGGGACuUGUAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 167231 | 0.72 | 0.631998 |
Target: 5'- cCCGucugcucCCGCGgCCA-GUCCCUGGAUGUCg -3' miRNA: 3'- -GGC-------GGCGCaGGUgCAGGGACUUGUAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 166549 | 0.69 | 0.79625 |
Target: 5'- -gGCCGUGgCCACGUCgCUGAAgAg- -3' miRNA: 3'- ggCGGCGCaGGUGCAGgGACUUgUag -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 165275 | 0.75 | 0.450195 |
Target: 5'- cCCGCCaUGgCCAUGUCCCUGGugAUUa -3' miRNA: 3'- -GGCGGcGCaGGUGCAGGGACUugUAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 158507 | 1.11 | 0.002277 |
Target: 5'- aCCGCCGCGUCCACGUCCCUGAACAUCu -3' miRNA: 3'- -GGCGGCGCAGGUGCAGGGACUUGUAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 158131 | 0.69 | 0.778364 |
Target: 5'- -gGCCGCGUCCAgGUCCg-GcAgGUCa -3' miRNA: 3'- ggCGGCGCAGGUgCAGGgaCuUgUAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 151471 | 0.76 | 0.398427 |
Target: 5'- gCGCCGCGUCCACGUUggCUUcGAAgAUCu -3' miRNA: 3'- gGCGGCGCAGGUGCAG--GGA-CUUgUAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 145495 | 0.69 | 0.79625 |
Target: 5'- uCCGgCGUGUCCACGgagaCUCUG-ACGUa -3' miRNA: 3'- -GGCgGCGCAGGUGCa---GGGACuUGUAg -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 139212 | 0.71 | 0.656967 |
Target: 5'- -aGCCGCGgucccccacccuucCCugGUCCCUGGGCu-- -3' miRNA: 3'- ggCGGCGCa-------------GGugCAGGGACUUGuag -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 137568 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 137475 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 137382 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 137289 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 137196 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 137103 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 137010 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 136917 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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