Results 41 - 58 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29142 | 3' | -62.3 | NC_006146.1 | + | 125618 | 0.66 | 0.559597 |
Target: 5'- -cACCGagGGuGGGGCaUGGGCUGGUg-- -3' miRNA: 3'- uaUGGCa-CC-CCCCG-GUCCGACCGuaa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 67586 | 0.66 | 0.579338 |
Target: 5'- uUACUuUGGGGGGCCcguGGCguuUGGCc-- -3' miRNA: 3'- uAUGGcACCCCCCGGu--CCG---ACCGuaa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 91773 | 0.68 | 0.464589 |
Target: 5'- gGUGCC-UGGGGuGCCGuGCUGGCAc- -3' miRNA: 3'- -UAUGGcACCCCcCGGUcCGACCGUaa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 156815 | 0.68 | 0.455535 |
Target: 5'- -gGCC-UGGGGuGGCCGGGgaGGgGUg -3' miRNA: 3'- uaUGGcACCCC-CCGGUCCgaCCgUAa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 141716 | 0.7 | 0.339908 |
Target: 5'- -aGCUGaGGGGGGCCGGGgaGGgAg- -3' miRNA: 3'- uaUGGCaCCCCCCGGUCCgaCCgUaa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 144794 | 0.7 | 0.339908 |
Target: 5'- -aGCUGaGGGGGGCCGGGgaGGgAg- -3' miRNA: 3'- uaUGGCaCCCCCCGGUCCgaCCgUaa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 147872 | 0.7 | 0.339908 |
Target: 5'- -aGCUGaGGGGGGCCGGGgaGGgAg- -3' miRNA: 3'- uaUGGCaCCCCCCGGUCCgaCCgUaa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 150950 | 0.7 | 0.339908 |
Target: 5'- -aGCUGaGGGGGGCCGGGgaGGgAg- -3' miRNA: 3'- uaUGGCaCCCCCCGGUCCgaCCgUaa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 154028 | 0.7 | 0.339908 |
Target: 5'- -aGCUGaGGGGGGCCGGGgaGGgAg- -3' miRNA: 3'- uaUGGCaCCCCCCGGUCCgaCCgUaa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 161456 | 0.7 | 0.339908 |
Target: 5'- -gGCgCGUGGGGcGGgUAGGCUGGUg-- -3' miRNA: 3'- uaUG-GCACCCC-CCgGUCCGACCGuaa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 51171 | 0.7 | 0.355065 |
Target: 5'- -cGCUGUGgguguggaaGGGGGUCugcGGGCUGGCGUg -3' miRNA: 3'- uaUGGCAC---------CCCCCGG---UCCGACCGUAa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 157106 | 0.7 | 0.339908 |
Target: 5'- -aGCUGaGGGGGGCCGGGgaGGgAg- -3' miRNA: 3'- uaUGGCaCCCCCCGGUCCgaCCgUaa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 141426 | 0.68 | 0.455535 |
Target: 5'- -gGCC-UGGGGuGGCCGGGgaGGgGUg -3' miRNA: 3'- uaUGGcACCCC-CCGGUCCgaCCgUAa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 144504 | 0.68 | 0.455535 |
Target: 5'- -gGCC-UGGGGuGGCCGGGgaGGgGUg -3' miRNA: 3'- uaUGGcACCCC-CCGGUCCgaCCgUAa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 147582 | 0.68 | 0.455535 |
Target: 5'- -gGCC-UGGGGuGGCCGGGgaGGgGUg -3' miRNA: 3'- uaUGGcACCCC-CCGGUCCgaCCgUAa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 150660 | 0.68 | 0.455535 |
Target: 5'- -gGCC-UGGGGuGGCCGGGgaGGgGUg -3' miRNA: 3'- uaUGGcACCCC-CCGGUCCgaCCgUAa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 153737 | 0.68 | 0.455535 |
Target: 5'- -gGCC-UGGGGuGGCCGGGgaGGgGUg -3' miRNA: 3'- uaUGGcACCCC-CCGGUCCgaCCgUAa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 92319 | 0.66 | 0.609205 |
Target: 5'- cUGCUGggGGGcGGGCCcGGCcuggGGCAg- -3' miRNA: 3'- uAUGGCa-CCC-CCCGGuCCGa---CCGUaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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