miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29142 3' -62.3 NC_006146.1 + 33214 0.68 0.492293
Target:  5'- -gGCCGgaGGGGGaGCCgggaugGGGCUGGgGUUc -3'
miRNA:   3'- uaUGGCa-CCCCC-CGG------UCCGACCgUAA- -5'
29142 3' -62.3 NC_006146.1 + 95734 0.68 0.492293
Target:  5'- aAUGCCcaGUGGGGGG---GGCUGGUGUUg -3'
miRNA:   3'- -UAUGG--CACCCCCCgguCCGACCGUAA- -5'
29142 3' -62.3 NC_006146.1 + 49657 0.68 0.489488
Target:  5'- -gACCGUcucgaacucgggcaGGGGGGCUAuGGC-GGCGUc -3'
miRNA:   3'- uaUGGCA--------------CCCCCCGGU-CCGaCCGUAa -5'
29142 3' -62.3 NC_006146.1 + 141298 0.68 0.473735
Target:  5'- -gGgCGgcuGGGGGUCGGGCUGGCc-- -3'
miRNA:   3'- uaUgGCac-CCCCCGGUCCGACCGuaa -5'
29142 3' -62.3 NC_006146.1 + 147454 0.68 0.473735
Target:  5'- -gGgCGgcuGGGGGUCGGGCUGGCc-- -3'
miRNA:   3'- uaUgGCac-CCCCCGGUCCGACCGuaa -5'
29142 3' -62.3 NC_006146.1 + 101668 0.68 0.473735
Target:  5'- -gGCCcUGGGGGGaaaCGGGCUacgGGCGg- -3'
miRNA:   3'- uaUGGcACCCCCCg--GUCCGA---CCGUaa -5'
29142 3' -62.3 NC_006146.1 + 153610 0.68 0.473735
Target:  5'- -gGgCGgcuGGGGGUCGGGCUGGCc-- -3'
miRNA:   3'- uaUgGCac-CCCCCGGUCCGACCGuaa -5'
29142 3' -62.3 NC_006146.1 + 150532 0.68 0.473735
Target:  5'- -gGgCGgcuGGGGGUCGGGCUGGCc-- -3'
miRNA:   3'- uaUgGCac-CCCCCGGUCCGACCGuaa -5'
29142 3' -62.3 NC_006146.1 + 156687 0.68 0.473735
Target:  5'- -gGgCGgcuGGGGGUCGGGCUGGCc-- -3'
miRNA:   3'- uaUgGCac-CCCCCGGUCCGACCGuaa -5'
29142 3' -62.3 NC_006146.1 + 144376 0.68 0.473735
Target:  5'- -gGgCGgcuGGGGGUCGGGCUGGCc-- -3'
miRNA:   3'- uaUgGCac-CCCCCGGUCCGACCGuaa -5'
29142 3' -62.3 NC_006146.1 + 91773 0.68 0.464589
Target:  5'- gGUGCC-UGGGGuGCCGuGCUGGCAc- -3'
miRNA:   3'- -UAUGGcACCCCcCGGUcCGACCGUaa -5'
29142 3' -62.3 NC_006146.1 + 153737 0.68 0.455535
Target:  5'- -gGCC-UGGGGuGGCCGGGgaGGgGUg -3'
miRNA:   3'- uaUGGcACCCC-CCGGUCCgaCCgUAa -5'
29142 3' -62.3 NC_006146.1 + 141426 0.68 0.455535
Target:  5'- -gGCC-UGGGGuGGCCGGGgaGGgGUg -3'
miRNA:   3'- uaUGGcACCCC-CCGGUCCgaCCgUAa -5'
29142 3' -62.3 NC_006146.1 + 156815 0.68 0.455535
Target:  5'- -gGCC-UGGGGuGGCCGGGgaGGgGUg -3'
miRNA:   3'- uaUGGcACCCC-CCGGUCCgaCCgUAa -5'
29142 3' -62.3 NC_006146.1 + 150660 0.68 0.455535
Target:  5'- -gGCC-UGGGGuGGCCGGGgaGGgGUg -3'
miRNA:   3'- uaUGGcACCCC-CCGGUCCgaCCgUAa -5'
29142 3' -62.3 NC_006146.1 + 147582 0.68 0.455535
Target:  5'- -gGCC-UGGGGuGGCCGGGgaGGgGUg -3'
miRNA:   3'- uaUGGcACCCC-CCGGUCCgaCCgUAa -5'
29142 3' -62.3 NC_006146.1 + 144504 0.68 0.455535
Target:  5'- -gGCC-UGGGGuGGCCGGGgaGGgGUg -3'
miRNA:   3'- uaUGGcACCCC-CCGGUCCgaCCgUAa -5'
29142 3' -62.3 NC_006146.1 + 44755 0.68 0.455535
Target:  5'- -gGCUGUGGuugucGGGGCCcGGCgGGCGg- -3'
miRNA:   3'- uaUGGCACC-----CCCCGGuCCGaCCGUaa -5'
29142 3' -62.3 NC_006146.1 + 93899 0.69 0.394997
Target:  5'- uUugCGgcagGGGGGGCCAGcacGgaGGCGUa -3'
miRNA:   3'- uAugGCa---CCCCCCGGUC---CgaCCGUAa -5'
29142 3' -62.3 NC_006146.1 + 51171 0.7 0.355065
Target:  5'- -cGCUGUGgguguggaaGGGGGUCugcGGGCUGGCGUg -3'
miRNA:   3'- uaUGGCAC---------CCCCCGG---UCCGACCGUAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.