miRNA display CGI


Results 21 - 40 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29143 5' -58.1 NC_006146.1 + 56871 0.68 0.76923
Target:  5'- --gCugGggC-UGGCGGCCCCCGuGUu -3'
miRNA:   3'- cagGugCuaGuACUGCCGGGGGCuCA- -5'
29143 5' -58.1 NC_006146.1 + 61198 0.7 0.613015
Target:  5'- --aCACGGUCAUGGCGGagcucugCCCCGAu- -3'
miRNA:   3'- cagGUGCUAGUACUGCCg------GGGGCUca -5'
29143 5' -58.1 NC_006146.1 + 61876 0.71 0.553609
Target:  5'- uUCCACGGg---GGCGcGCCCUCGGGUa -3'
miRNA:   3'- cAGGUGCUaguaCUGC-CGGGGGCUCA- -5'
29143 5' -58.1 NC_006146.1 + 66648 0.66 0.861531
Target:  5'- -cCCACGAUagc-AUGGCCUCUGGGUa -3'
miRNA:   3'- caGGUGCUAguacUGCCGGGGGCUCA- -5'
29143 5' -58.1 NC_006146.1 + 72433 0.71 0.573269
Target:  5'- gGUCCGCGGaC-UGACccagagacuGGCCCCCGGGc -3'
miRNA:   3'- -CAGGUGCUaGuACUG---------CCGGGGGCUCa -5'
29143 5' -58.1 NC_006146.1 + 73042 0.66 0.861531
Target:  5'- uUCCACGGccCGgggucGGCGGCCCCCu--- -3'
miRNA:   3'- cAGGUGCUa-GUa----CUGCCGGGGGcuca -5'
29143 5' -58.1 NC_006146.1 + 108980 0.69 0.712277
Target:  5'- -cCCugGAgccCcUGAUGGCCCgCCGGGUc -3'
miRNA:   3'- caGGugCUa--GuACUGCCGGG-GGCUCA- -5'
29143 5' -58.1 NC_006146.1 + 110837 0.67 0.821998
Target:  5'- cUCCACGGgaCGaGGCGGCgCCCGAu- -3'
miRNA:   3'- cAGGUGCUa-GUaCUGCCGgGGGCUca -5'
29143 5' -58.1 NC_006146.1 + 114151 0.72 0.528365
Target:  5'- cUCCGCGAUCAggccccgGAcgucccgcgcgaauuCGGCCCCCuGAGa -3'
miRNA:   3'- cAGGUGCUAGUa------CU---------------GCCGGGGG-CUCa -5'
29143 5' -58.1 NC_006146.1 + 116086 0.78 0.249668
Target:  5'- cGUCCugGugcAUgGUGGCGGCCaCCCGAGg -3'
miRNA:   3'- -CAGGugC---UAgUACUGCCGG-GGGCUCa -5'
29143 5' -58.1 NC_006146.1 + 118495 0.8 0.201428
Target:  5'- -gCCACGGUCuUGACGGCCCCCa--- -3'
miRNA:   3'- caGGUGCUAGuACUGCCGGGGGcuca -5'
29143 5' -58.1 NC_006146.1 + 123295 0.77 0.286875
Target:  5'- aUCgGCGAUCccUGGCGGCCgCCGAGUg -3'
miRNA:   3'- cAGgUGCUAGu-ACUGCCGGgGGCUCA- -5'
29143 5' -58.1 NC_006146.1 + 127001 0.68 0.76923
Target:  5'- gGUCC-CGGagcUCAUGugGGCUCCCa--- -3'
miRNA:   3'- -CAGGuGCU---AGUACugCCGGGGGcuca -5'
29143 5' -58.1 NC_006146.1 + 128054 0.69 0.721982
Target:  5'- cUgCGCGugggCcUGGCGGCCCUCGAGg -3'
miRNA:   3'- cAgGUGCua--GuACUGCCGGGGGCUCa -5'
29143 5' -58.1 NC_006146.1 + 130385 0.69 0.721982
Target:  5'- -cCCGgGAaaaCAcGugGGCCCCCGAGc -3'
miRNA:   3'- caGGUgCUa--GUaCugCCGGGGGCUCa -5'
29143 5' -58.1 NC_006146.1 + 143301 0.66 0.861531
Target:  5'- -cCCAUGA---UGugGGCCCUgGAGg -3'
miRNA:   3'- caGGUGCUaguACugCCGGGGgCUCa -5'
29143 5' -58.1 NC_006146.1 + 146277 0.69 0.702508
Target:  5'- --gCGCGA-CGUGGCGGCCCCagugGAGc -3'
miRNA:   3'- cagGUGCUaGUACUGCCGGGGg---CUCa -5'
29143 5' -58.1 NC_006146.1 + 146379 0.66 0.861531
Target:  5'- -cCCAUGA---UGugGGCCCUgGAGg -3'
miRNA:   3'- caGGUGCUaguACugCCGGGGgCUCa -5'
29143 5' -58.1 NC_006146.1 + 148493 0.67 0.796249
Target:  5'- -aCCugGGUCAccACGGUggaCCCCGGGg -3'
miRNA:   3'- caGGugCUAGUacUGCCG---GGGGCUCa -5'
29143 5' -58.1 NC_006146.1 + 149457 0.66 0.861531
Target:  5'- -cCCAUGA---UGugGGCCCUgGAGg -3'
miRNA:   3'- caGGUGCUaguACugCCGGGGgCUCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.