miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29143 5' -58.1 NC_006146.1 + 200 0.66 0.830262
Target:  5'- cUCUACGcgCcgGugcccccgcgACGGUCCCCGGGg -3'
miRNA:   3'- cAGGUGCuaGuaC----------UGCCGGGGGCUCa -5'
29143 5' -58.1 NC_006146.1 + 6428 0.7 0.662946
Target:  5'- -cCCAgGGcCAUGugGGCCCUgGGGUc -3'
miRNA:   3'- caGGUgCUaGUACugCCGGGGgCUCA- -5'
29143 5' -58.1 NC_006146.1 + 8600 0.66 0.830262
Target:  5'- uGUgaGCgGGUCAgaaagacucGACGGCCCCUGGGUg -3'
miRNA:   3'- -CAggUG-CUAGUa--------CUGCCGGGGGCUCA- -5'
29143 5' -58.1 NC_006146.1 + 8779 0.66 0.838354
Target:  5'- -cCCACcGUgG-GACGGCCCCCcAGUg -3'
miRNA:   3'- caGGUGcUAgUaCUGCCGGGGGcUCA- -5'
29143 5' -58.1 NC_006146.1 + 11508 0.68 0.76923
Target:  5'- -gUCAUGAUCGUGgacagcGCGGCCUgCGAGc -3'
miRNA:   3'- caGGUGCUAGUAC------UGCCGGGgGCUCa -5'
29143 5' -58.1 NC_006146.1 + 14538 0.66 0.853995
Target:  5'- cUCCGCGugcgCAuaaUGGCGGCCCUgGAc- -3'
miRNA:   3'- cAGGUGCua--GU---ACUGCCGGGGgCUca -5'
29143 5' -58.1 NC_006146.1 + 17616 0.66 0.853995
Target:  5'- cUCCGCGugcgCAuaaUGGCGGCCCUgGAc- -3'
miRNA:   3'- cAGGUGCua--GU---ACUGCCGGGGgCUca -5'
29143 5' -58.1 NC_006146.1 + 17692 0.66 0.853995
Target:  5'- aUCUACGGgcggccCGUGGCGGCCaagcgCCUGGGg -3'
miRNA:   3'- cAGGUGCUa-----GUACUGCCGG-----GGGCUCa -5'
29143 5' -58.1 NC_006146.1 + 20694 0.66 0.853995
Target:  5'- cUCCGCGugcgCAuaaUGGCGGCCCUgGAc- -3'
miRNA:   3'- cAGGUGCua--GU---ACUGCCGGGGgCUca -5'
29143 5' -58.1 NC_006146.1 + 23772 0.66 0.853995
Target:  5'- cUCCGCGugcgCAuaaUGGCGGCCCUgGAc- -3'
miRNA:   3'- cAGGUGCua--GU---ACUGCCGGGGgCUca -5'
29143 5' -58.1 NC_006146.1 + 26850 0.66 0.853995
Target:  5'- cUCCGCGugcgCAuaaUGGCGGCCCUgGAc- -3'
miRNA:   3'- cAGGUGCua--GU---ACUGCCGGGGgCUca -5'
29143 5' -58.1 NC_006146.1 + 38151 0.66 0.868869
Target:  5'- -aCCGCGG-CAUc-CGGCCCCgGAGa -3'
miRNA:   3'- caGGUGCUaGUAcuGCCGGGGgCUCa -5'
29143 5' -58.1 NC_006146.1 + 40160 0.69 0.682807
Target:  5'- -aCCugGAgu-UGACGGCgaCCCGGGUg -3'
miRNA:   3'- caGGugCUaguACUGCCGg-GGGCUCA- -5'
29143 5' -58.1 NC_006146.1 + 41048 0.66 0.830262
Target:  5'- cGUCCGCGG-CGgcccUGGgGGCCUCgGGGUg -3'
miRNA:   3'- -CAGGUGCUaGU----ACUgCCGGGGgCUCA- -5'
29143 5' -58.1 NC_006146.1 + 51706 0.67 0.81101
Target:  5'- cGUCCuccguguCGGUgGUGgaggacauggggagGCGGCgCCCCGAGg -3'
miRNA:   3'- -CAGGu------GCUAgUAC--------------UGCCG-GGGGCUCa -5'
29143 5' -58.1 NC_006146.1 + 51797 0.69 0.702508
Target:  5'- aGUCCAgccacuUGAUCAggagGGCGGCCuCCuCGGGa -3'
miRNA:   3'- -CAGGU------GCUAGUa---CUGCCGG-GG-GCUCa -5'
29143 5' -58.1 NC_006146.1 + 52395 0.79 0.232607
Target:  5'- cGUCCGucuCGAUgAUGAUGGCCCCCGcGUa -3'
miRNA:   3'- -CAGGU---GCUAgUACUGCCGGGGGCuCA- -5'
29143 5' -58.1 NC_006146.1 + 55624 0.7 0.662946
Target:  5'- --aCACGuaGUCGUagaaGAgGGCCCCCGAGg -3'
miRNA:   3'- cagGUGC--UAGUA----CUgCCGGGGGCUCa -5'
29143 5' -58.1 NC_006146.1 + 56113 0.66 0.861531
Target:  5'- cUCCACGAaggCgaagGUGgccGCGGgCCCCGAGa -3'
miRNA:   3'- cAGGUGCUa--G----UAC---UGCCgGGGGCUCa -5'
29143 5' -58.1 NC_006146.1 + 56809 0.67 0.796249
Target:  5'- cGUCUgGCGggCggGGCuucuGGCCCCCGAGg -3'
miRNA:   3'- -CAGG-UGCuaGuaCUG----CCGGGGGCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.