miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29143 5' -58.1 NC_006146.1 + 159404 1.06 0.003421
Target:  5'- uGUCCACGAUCAUGACGGCCCCCGAGUc -3'
miRNA:   3'- -CAGGUGCUAGUACUGCCGGGGGCUCA- -5'
29143 5' -58.1 NC_006146.1 + 118495 0.8 0.201428
Target:  5'- -gCCACGGUCuUGACGGCCCCCa--- -3'
miRNA:   3'- caGGUGCUAGuACUGCCGGGGGcuca -5'
29143 5' -58.1 NC_006146.1 + 52395 0.79 0.232607
Target:  5'- cGUCCGucuCGAUgAUGAUGGCCCCCGcGUa -3'
miRNA:   3'- -CAGGU---GCUAgUACUGCCGGGGGCuCA- -5'
29143 5' -58.1 NC_006146.1 + 116086 0.78 0.249668
Target:  5'- cGUCCugGugcAUgGUGGCGGCCaCCCGAGg -3'
miRNA:   3'- -CAGGugC---UAgUACUGCCGG-GGGCUCa -5'
29143 5' -58.1 NC_006146.1 + 123295 0.77 0.286875
Target:  5'- aUCgGCGAUCccUGGCGGCCgCCGAGUg -3'
miRNA:   3'- cAGgUGCUAGu-ACUGCCGGgGGCUCA- -5'
29143 5' -58.1 NC_006146.1 + 114151 0.72 0.528365
Target:  5'- cUCCGCGAUCAggccccgGAcgucccgcgcgaauuCGGCCCCCuGAGa -3'
miRNA:   3'- cAGGUGCUAGUa------CU---------------GCCGGGGG-CUCa -5'
29143 5' -58.1 NC_006146.1 + 61876 0.71 0.553609
Target:  5'- uUCCACGGg---GGCGcGCCCUCGGGUa -3'
miRNA:   3'- cAGGUGCUaguaCUGC-CGGGGGCUCA- -5'
29143 5' -58.1 NC_006146.1 + 72433 0.71 0.573269
Target:  5'- gGUCCGCGGaC-UGACccagagacuGGCCCCCGGGc -3'
miRNA:   3'- -CAGGUGCUaGuACUG---------CCGGGGGCUCa -5'
29143 5' -58.1 NC_006146.1 + 61198 0.7 0.613015
Target:  5'- --aCACGGUCAUGGCGGagcucugCCCCGAu- -3'
miRNA:   3'- cagGUGCUAGUACUGCCg------GGGGCUca -5'
29143 5' -58.1 NC_006146.1 + 6428 0.7 0.662946
Target:  5'- -cCCAgGGcCAUGugGGCCCUgGGGUc -3'
miRNA:   3'- caGGUgCUaGUACugCCGGGGgCUCA- -5'
29143 5' -58.1 NC_006146.1 + 55624 0.7 0.662946
Target:  5'- --aCACGuaGUCGUagaaGAgGGCCCCCGAGg -3'
miRNA:   3'- cagGUGC--UAGUA----CUgCCGGGGGCUCa -5'
29143 5' -58.1 NC_006146.1 + 40160 0.69 0.682807
Target:  5'- -aCCugGAgu-UGACGGCgaCCCGGGUg -3'
miRNA:   3'- caGGugCUaguACUGCCGg-GGGCUCA- -5'
29143 5' -58.1 NC_006146.1 + 146277 0.69 0.702508
Target:  5'- --gCGCGA-CGUGGCGGCCCCagugGAGc -3'
miRNA:   3'- cagGUGCUaGUACUGCCGGGGg---CUCa -5'
29143 5' -58.1 NC_006146.1 + 51797 0.69 0.702508
Target:  5'- aGUCCAgccacuUGAUCAggagGGCGGCCuCCuCGGGa -3'
miRNA:   3'- -CAGGU------GCUAGUa---CUGCCGG-GG-GCUCa -5'
29143 5' -58.1 NC_006146.1 + 108980 0.69 0.712277
Target:  5'- -cCCugGAgccCcUGAUGGCCCgCCGGGUc -3'
miRNA:   3'- caGGugCUa--GuACUGCCGGG-GGCUCA- -5'
29143 5' -58.1 NC_006146.1 + 128054 0.69 0.721982
Target:  5'- cUgCGCGugggCcUGGCGGCCCUCGAGg -3'
miRNA:   3'- cAgGUGCua--GuACUGCCGGGGGCUCa -5'
29143 5' -58.1 NC_006146.1 + 130385 0.69 0.721982
Target:  5'- -cCCGgGAaaaCAcGugGGCCCCCGAGc -3'
miRNA:   3'- caGGUgCUa--GUaCugCCGGGGGCUCa -5'
29143 5' -58.1 NC_006146.1 + 11508 0.68 0.76923
Target:  5'- -gUCAUGAUCGUGgacagcGCGGCCUgCGAGc -3'
miRNA:   3'- caGGUGCUAGUAC------UGCCGGGgGCUCa -5'
29143 5' -58.1 NC_006146.1 + 127001 0.68 0.76923
Target:  5'- gGUCC-CGGagcUCAUGugGGCUCCCa--- -3'
miRNA:   3'- -CAGGuGCU---AGUACugCCGGGGGcuca -5'
29143 5' -58.1 NC_006146.1 + 56871 0.68 0.76923
Target:  5'- --gCugGggC-UGGCGGCCCCCGuGUu -3'
miRNA:   3'- cagGugCuaGuACUGCCGGGGGCuCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.