miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29144 5' -60.3 NC_006146.1 + 124628 0.67 0.703661
Target:  5'- gCCACCgggGCUcaaaacgucgggGACGCGCAcCGCC-GCu -3'
miRNA:   3'- -GGUGGa--CGGa-----------CUGCGCGUcGCGGaCG- -5'
29144 5' -60.3 NC_006146.1 + 167348 0.67 0.695907
Target:  5'- aCGCUcGgCUGcACGCGCggcGGCGCCgGCc -3'
miRNA:   3'- gGUGGaCgGAC-UGCGCG---UCGCGGaCG- -5'
29144 5' -60.3 NC_006146.1 + 123702 0.67 0.695907
Target:  5'- gCgGCCagggGCCUGGCGCucgggGCGGCGgCggGCu -3'
miRNA:   3'- -GgUGGa---CGGACUGCG-----CGUCGCgGa-CG- -5'
29144 5' -60.3 NC_006146.1 + 168280 0.67 0.695907
Target:  5'- aCGCUcGgCUGcACGCGCggcGGCGCCgGCc -3'
miRNA:   3'- gGUGGaCgGAC-UGCGCG---UCGCGGaCG- -5'
29144 5' -60.3 NC_006146.1 + 41704 0.67 0.695907
Target:  5'- cUCACCgGCggGGgGUGCGGCGCUgugGCc -3'
miRNA:   3'- -GGUGGaCGgaCUgCGCGUCGCGGa--CG- -5'
29144 5' -60.3 NC_006146.1 + 35140 0.67 0.695907
Target:  5'- cCCGCCUGCCUcAC-CGUGGCacacuaauccCCUGCu -3'
miRNA:   3'- -GGUGGACGGAcUGcGCGUCGc---------GGACG- -5'
29144 5' -60.3 NC_006146.1 + 169212 0.67 0.695907
Target:  5'- aCGCUcGgCUGcACGCGCggcGGCGCCgGCc -3'
miRNA:   3'- gGUGGaCgGAC-UGCGCG---UCGCGGaCG- -5'
29144 5' -60.3 NC_006146.1 + 170143 0.67 0.695907
Target:  5'- aCGCUcGgCUGcACGCGCggcGGCGCCgGCc -3'
miRNA:   3'- gGUGGaCgGAC-UGCGCG---UCGCGGaCG- -5'
29144 5' -60.3 NC_006146.1 + 168225 0.67 0.68617
Target:  5'- -gGCCgGCggGAgGgGcCGGCGCCUGCa -3'
miRNA:   3'- ggUGGaCGgaCUgCgC-GUCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 829 0.67 0.68617
Target:  5'- cCCGCCgGCCauccccACGCGCGGCcCCggGCc -3'
miRNA:   3'- -GGUGGaCGGac----UGCGCGUCGcGGa-CG- -5'
29144 5' -60.3 NC_006146.1 + 3625 0.67 0.68617
Target:  5'- cCCGCCgGCCauccccACGCGCGGCcCCggGCc -3'
miRNA:   3'- -GGUGGaCGGac----UGCGCGUCGcGGa-CG- -5'
29144 5' -60.3 NC_006146.1 + 2693 0.67 0.68617
Target:  5'- cCCGCCgGCCauccccACGCGCGGCcCCggGCc -3'
miRNA:   3'- -GGUGGaCGGac----UGCGCGUCGcGGa-CG- -5'
29144 5' -60.3 NC_006146.1 + 169157 0.67 0.68617
Target:  5'- -gGCCgGCggGAgGgGcCGGCGCCUGCa -3'
miRNA:   3'- ggUGGaCGgaCUgCgC-GUCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 167293 0.67 0.68617
Target:  5'- -gGCCgGCggGAgGgGcCGGCGCCUGCa -3'
miRNA:   3'- ggUGGaCGgaCUgCgC-GUCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 70144 0.67 0.68617
Target:  5'- gCCGCCUucGCCUGGCuccuggccgggGCGCuGGUGgCCgGCg -3'
miRNA:   3'- -GGUGGA--CGGACUG-----------CGCG-UCGC-GGaCG- -5'
29144 5' -60.3 NC_006146.1 + 1761 0.67 0.68617
Target:  5'- cCCGCCgGCCauccccACGCGCGGCcCCggGCc -3'
miRNA:   3'- -GGUGGaCGGac----UGCGCGUCGcGGa-CG- -5'
29144 5' -60.3 NC_006146.1 + 124799 0.67 0.68617
Target:  5'- gCCugCUGCUgcucGCGCGaCGGUGCUUcGCc -3'
miRNA:   3'- -GGugGACGGac--UGCGC-GUCGCGGA-CG- -5'
29144 5' -60.3 NC_006146.1 + 16661 0.67 0.685194
Target:  5'- cCCACCagcgGCCUGGCuaacgguGUGCGGCGUUacGCc -3'
miRNA:   3'- -GGUGGa---CGGACUG-------CGCGUCGCGGa-CG- -5'
29144 5' -60.3 NC_006146.1 + 110827 0.67 0.680308
Target:  5'- gCCACCagcuuccuuuauaaGCUgaagGACGCGCaggAGCGgCUGCu -3'
miRNA:   3'- -GGUGGa-------------CGGa---CUGCGCG---UCGCgGACG- -5'
29144 5' -60.3 NC_006146.1 + 154658 0.67 0.676391
Target:  5'- gCCGCCgGCUgcaccgugGugGCGgGGgGCgCUGCu -3'
miRNA:   3'- -GGUGGaCGGa-------CugCGCgUCgCG-GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.