miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29144 5' -60.3 NC_006146.1 + 144693 0.66 0.743684
Target:  5'- gCGCCcuUGCCUGGagGCGagacugGGCGgCUGCg -3'
miRNA:   3'- gGUGG--ACGGACUg-CGCg-----UCGCgGACG- -5'
29144 5' -60.3 NC_006146.1 + 42688 0.66 0.739931
Target:  5'- gCGCCgaaagagcgucugGCCcGGCGcCGCGGCGCCc-- -3'
miRNA:   3'- gGUGGa------------CGGaCUGC-GCGUCGCGGacg -5'
29144 5' -60.3 NC_006146.1 + 112512 0.66 0.734277
Target:  5'- gCCACUgcagaugaugUGCCUGugGCauuuGCAGgCGCUggUGUa -3'
miRNA:   3'- -GGUGG----------ACGGACugCG----CGUC-GCGG--ACG- -5'
29144 5' -60.3 NC_006146.1 + 41769 0.66 0.734277
Target:  5'- cCCGCCggagGCCc--UGCGCccgGGCGCCcGCu -3'
miRNA:   3'- -GGUGGa---CGGacuGCGCG---UCGCGGaCG- -5'
29144 5' -60.3 NC_006146.1 + 114367 0.66 0.734277
Target:  5'- -gGCCcGCgUGACGCGuCAGCugcugaugGCCgGCg -3'
miRNA:   3'- ggUGGaCGgACUGCGC-GUCG--------CGGaCG- -5'
29144 5' -60.3 NC_006146.1 + 39663 0.66 0.733332
Target:  5'- aCUGCCUugGCCUuggaggcGGCGgGCuccuGgGCCUGCa -3'
miRNA:   3'- -GGUGGA--CGGA-------CUGCgCGu---CgCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 120745 0.66 0.724788
Target:  5'- cCCcCCUGguCCUGACGaCG-AGCGCUgGCg -3'
miRNA:   3'- -GGuGGAC--GGACUGC-GCgUCGCGGaCG- -5'
29144 5' -60.3 NC_006146.1 + 8513 0.66 0.724788
Target:  5'- cCCACCgggGUCccgGGCGCGgGcGCGCCaagggGCu -3'
miRNA:   3'- -GGUGGa--CGGa--CUGCGCgU-CGCGGa----CG- -5'
29144 5' -60.3 NC_006146.1 + 40955 0.66 0.724788
Target:  5'- cCCACCccagguccgUGCCguagaccgccGugGUGCcGCGCCgGCg -3'
miRNA:   3'- -GGUGG---------ACGGa---------CugCGCGuCGCGGaCG- -5'
29144 5' -60.3 NC_006146.1 + 3543 0.67 0.715224
Target:  5'- gCCcCCgGCC-GGCGcCGCcGCGCgUGCa -3'
miRNA:   3'- -GGuGGaCGGaCUGC-GCGuCGCGgACG- -5'
29144 5' -60.3 NC_006146.1 + 2611 0.67 0.715224
Target:  5'- gCCcCCgGCC-GGCGcCGCcGCGCgUGCa -3'
miRNA:   3'- -GGuGGaCGGaCUGC-GCGuCGCGgACG- -5'
29144 5' -60.3 NC_006146.1 + 1679 0.67 0.715224
Target:  5'- gCCcCCgGCC-GGCGcCGCcGCGCgUGCa -3'
miRNA:   3'- -GGuGGaCGGaCUGC-GCGuCGCGgACG- -5'
29144 5' -60.3 NC_006146.1 + 104072 0.67 0.715224
Target:  5'- aCC-UCUGCCUGACG-GUgaGGCGCgaGUu -3'
miRNA:   3'- -GGuGGACGGACUGCgCG--UCGCGgaCG- -5'
29144 5' -60.3 NC_006146.1 + 48261 0.67 0.715224
Target:  5'- cCCGCCgccGuCCUGGCGCGaaagAGgGCCccgGCc -3'
miRNA:   3'- -GGUGGa--C-GGACUGCGCg---UCgCGGa--CG- -5'
29144 5' -60.3 NC_006146.1 + 59006 0.67 0.715224
Target:  5'- aCAUCUGCCUccCGCGC--UGCCUGg -3'
miRNA:   3'- gGUGGACGGAcuGCGCGucGCGGACg -5'
29144 5' -60.3 NC_006146.1 + 748 0.67 0.715224
Target:  5'- gCCcCCgGCC-GGCGcCGCcGCGCgUGCa -3'
miRNA:   3'- -GGuGGaCGGaCUGC-GCGuCGCGgACG- -5'
29144 5' -60.3 NC_006146.1 + 114104 0.67 0.714264
Target:  5'- cCCGCCcGCCaGACGgcCGCcGCgcucaccgaggagGCCUGCg -3'
miRNA:   3'- -GGUGGaCGGaCUGC--GCGuCG-------------CGGACG- -5'
29144 5' -60.3 NC_006146.1 + 159481 0.67 0.705594
Target:  5'- gCCACCUugGCCUGGuCcUGCAG-GCuCUGCu -3'
miRNA:   3'- -GGUGGA--CGGACU-GcGCGUCgCG-GACG- -5'
29144 5' -60.3 NC_006146.1 + 116109 0.67 0.705594
Target:  5'- uCCAacgagCUGCCcaaGGCGCGCucccuGGCGgcCCUGCg -3'
miRNA:   3'- -GGUg----GACGGa--CUGCGCG-----UCGC--GGACG- -5'
29144 5' -60.3 NC_006146.1 + 120517 0.67 0.705594
Target:  5'- aCGCgaGCCgcgugGAUGCgGCGGCGggaCUGCu -3'
miRNA:   3'- gGUGgaCGGa----CUGCG-CGUCGCg--GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.