miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29144 5' -60.3 NC_006146.1 + 15636 0.69 0.568229
Target:  5'- cCCACCUGUUUacucaGACGCugAGCGCCgaGCa -3'
miRNA:   3'- -GGUGGACGGA-----CUGCGcgUCGCGGa-CG- -5'
29144 5' -60.3 NC_006146.1 + 16661 0.67 0.685194
Target:  5'- cCCACCagcgGCCUGGCuaacgguGUGCGGCGUUacGCc -3'
miRNA:   3'- -GGUGGa---CGGACUG-------CGCGUCGCGGa-CG- -5'
29144 5' -60.3 NC_006146.1 + 19499 0.67 0.676391
Target:  5'- aCAgCUGCCgc-CGCGCcauccccCGCCUGCa -3'
miRNA:   3'- gGUgGACGGacuGCGCGuc-----GCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 21233 0.68 0.615306
Target:  5'- aCgGCCUGCaaguucgugcaGGCGCGCugccGGCGCgUGCu -3'
miRNA:   3'- -GgUGGACGga---------CUGCGCG----UCGCGgACG- -5'
29144 5' -60.3 NC_006146.1 + 24428 0.71 0.482978
Target:  5'- gCCGCCUGCaaccaaUGG-GUGCuGCGCCcGCg -3'
miRNA:   3'- -GGUGGACGg-----ACUgCGCGuCGCGGaCG- -5'
29144 5' -60.3 NC_006146.1 + 24864 0.7 0.510792
Target:  5'- gCugCaGCUgGACGCGCAGUGCCaggagcUGCc -3'
miRNA:   3'- gGugGaCGGaCUGCGCGUCGCGG------ACG- -5'
29144 5' -60.3 NC_006146.1 + 35140 0.67 0.695907
Target:  5'- cCCGCCUGCCUcAC-CGUGGCacacuaauccCCUGCu -3'
miRNA:   3'- -GGUGGACGGAcUGcGCGUCGc---------GGACG- -5'
29144 5' -60.3 NC_006146.1 + 35497 0.68 0.646884
Target:  5'- gCCACCaGCCUGGgGUucgGCcGCGCgUGUu -3'
miRNA:   3'- -GGUGGaCGGACUgCG---CGuCGCGgACG- -5'
29144 5' -60.3 NC_006146.1 + 35969 0.68 0.607422
Target:  5'- -gACCUGCCgu-UGCGCAGgGCCcaaUGUc -3'
miRNA:   3'- ggUGGACGGacuGCGCGUCgCGG---ACG- -5'
29144 5' -60.3 NC_006146.1 + 36171 0.69 0.55852
Target:  5'- -gGCCUGgCUGGCcugGUGCAuGCauGCCUGCa -3'
miRNA:   3'- ggUGGACgGACUG---CGCGU-CG--CGGACG- -5'
29144 5' -60.3 NC_006146.1 + 38103 0.7 0.501443
Target:  5'- cCCGCCUGCagCUGcUGaGCAGCugcgaGCCUGCa -3'
miRNA:   3'- -GGUGGACG--GACuGCgCGUCG-----CGGACG- -5'
29144 5' -60.3 NC_006146.1 + 39663 0.66 0.733332
Target:  5'- aCUGCCUugGCCUuggaggcGGCGgGCuccuGgGCCUGCa -3'
miRNA:   3'- -GGUGGA--CGGA-------CUGCgCGu---CgCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 40384 0.7 0.520212
Target:  5'- gUCGCC-GCCcGGCGCGUAGUaGCCUcccGCg -3'
miRNA:   3'- -GGUGGaCGGaCUGCGCGUCG-CGGA---CG- -5'
29144 5' -60.3 NC_006146.1 + 40955 0.66 0.724788
Target:  5'- cCCACCccagguccgUGCCguagaccgccGugGUGCcGCGCCgGCg -3'
miRNA:   3'- -GGUGG---------ACGGa---------CugCGCGuCGCGGaCG- -5'
29144 5' -60.3 NC_006146.1 + 41704 0.67 0.695907
Target:  5'- cUCACCgGCggGGgGUGCGGCGCUgugGCc -3'
miRNA:   3'- -GGUGGaCGgaCUgCGCGUCGCGGa--CG- -5'
29144 5' -60.3 NC_006146.1 + 41769 0.66 0.734277
Target:  5'- cCCGCCggagGCCc--UGCGCccgGGCGCCcGCu -3'
miRNA:   3'- -GGUGGa---CGGacuGCGCG---UCGCGGaCG- -5'
29144 5' -60.3 NC_006146.1 + 42678 0.66 0.749285
Target:  5'- cCCGCggugggCUGCCUGAgGCuggcagagcccccCAGCGCCcGCu -3'
miRNA:   3'- -GGUG------GACGGACUgCGc------------GUCGCGGaCG- -5'
29144 5' -60.3 NC_006146.1 + 42688 0.66 0.739931
Target:  5'- gCGCCgaaagagcgucugGCCcGGCGcCGCGGCGCCc-- -3'
miRNA:   3'- gGUGGa------------CGGaCUGC-GCGUCGCGGacg -5'
29144 5' -60.3 NC_006146.1 + 42731 0.7 0.501443
Target:  5'- gCCGCCU-CCcGGCGuCGCuGCaucGCCUGCg -3'
miRNA:   3'- -GGUGGAcGGaCUGC-GCGuCG---CGGACG- -5'
29144 5' -60.3 NC_006146.1 + 43055 0.68 0.646884
Target:  5'- aCGCC-GCCUGGCGguugaGgGGUGCCaGCg -3'
miRNA:   3'- gGUGGaCGGACUGCg----CgUCGCGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.