miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29144 5' -60.3 NC_006146.1 + 748 0.67 0.715224
Target:  5'- gCCcCCgGCC-GGCGcCGCcGCGCgUGCa -3'
miRNA:   3'- -GGuGGaCGGaCUGC-GCGuCGCGgACG- -5'
29144 5' -60.3 NC_006146.1 + 829 0.67 0.68617
Target:  5'- cCCGCCgGCCauccccACGCGCGGCcCCggGCc -3'
miRNA:   3'- -GGUGGaCGGac----UGCGCGUCGcGGa-CG- -5'
29144 5' -60.3 NC_006146.1 + 1679 0.67 0.715224
Target:  5'- gCCcCCgGCC-GGCGcCGCcGCGCgUGCa -3'
miRNA:   3'- -GGuGGaCGGaCUGC-GCGuCGCGgACG- -5'
29144 5' -60.3 NC_006146.1 + 1761 0.67 0.68617
Target:  5'- cCCGCCgGCCauccccACGCGCGGCcCCggGCc -3'
miRNA:   3'- -GGUGGaCGGac----UGCGCGUCGcGGa-CG- -5'
29144 5' -60.3 NC_006146.1 + 2611 0.67 0.715224
Target:  5'- gCCcCCgGCC-GGCGcCGCcGCGCgUGCa -3'
miRNA:   3'- -GGuGGaCGGaCUGC-GCGuCGCGgACG- -5'
29144 5' -60.3 NC_006146.1 + 2693 0.67 0.68617
Target:  5'- cCCGCCgGCCauccccACGCGCGGCcCCggGCc -3'
miRNA:   3'- -GGUGGaCGGac----UGCGCGUCGcGGa-CG- -5'
29144 5' -60.3 NC_006146.1 + 3543 0.67 0.715224
Target:  5'- gCCcCCgGCC-GGCGcCGCcGCGCgUGCa -3'
miRNA:   3'- -GGuGGaCGGaCUGC-GCGuCGCGgACG- -5'
29144 5' -60.3 NC_006146.1 + 3625 0.67 0.68617
Target:  5'- cCCGCCgGCCauccccACGCGCGGCcCCggGCc -3'
miRNA:   3'- -GGUGGaCGGac----UGCGCGUCGcGGa-CG- -5'
29144 5' -60.3 NC_006146.1 + 4976 0.68 0.627146
Target:  5'- -aGCCU-CCUGgcggccucacuaACGCGgGGUGCCUGUg -3'
miRNA:   3'- ggUGGAcGGAC------------UGCGCgUCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 7768 0.72 0.429688
Target:  5'- -aAUCUGCCUGGuCGUGCucuGCGcCCUGUu -3'
miRNA:   3'- ggUGGACGGACU-GCGCGu--CGC-GGACG- -5'
29144 5' -60.3 NC_006146.1 + 8513 0.66 0.724788
Target:  5'- cCCACCgggGUCccgGGCGCGgGcGCGCCaagggGCu -3'
miRNA:   3'- -GGUGGa--CGGa--CUGCGCgU-CGCGGa----CG- -5'
29144 5' -60.3 NC_006146.1 + 10835 0.66 0.753
Target:  5'- gCCACaggUGCCUGACuGUGCcGCuccUCUGCg -3'
miRNA:   3'- -GGUGg--ACGGACUG-CGCGuCGc--GGACG- -5'
29144 5' -60.3 NC_006146.1 + 11353 0.68 0.646884
Target:  5'- aCACggGCCUGGCGCa-GGCG-CUGCg -3'
miRNA:   3'- gGUGgaCGGACUGCGcgUCGCgGACG- -5'
29144 5' -60.3 NC_006146.1 + 12498 0.68 0.646884
Target:  5'- aCCACgUGCUgcaguacucgUGcaaccccuuCGCGCAGCccGCCUGCc -3'
miRNA:   3'- -GGUGgACGG----------ACu--------GCGCGUCG--CGGACG- -5'
29144 5' -60.3 NC_006146.1 + 12773 0.72 0.404371
Target:  5'- -gACCUGCCgGACcuggaCGCGGC-CCUGCa -3'
miRNA:   3'- ggUGGACGGaCUGc----GCGUCGcGGACG- -5'
29144 5' -60.3 NC_006146.1 + 13547 0.68 0.627146
Target:  5'- aCCugCUGCa-GGCGCcgGGCGCCggGCu -3'
miRNA:   3'- -GGugGACGgaCUGCGcgUCGCGGa-CG- -5'
29144 5' -60.3 NC_006146.1 + 14133 0.66 0.777636
Target:  5'- gCgGCCUacaGCCaggUGuACGCGCuggccguggagcugAGCGUCUGCg -3'
miRNA:   3'- -GgUGGA---CGG---AC-UGCGCG--------------UCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 14321 0.66 0.780321
Target:  5'- gCACCUGCUggaGAacucaCGCAGgGCCguUGCg -3'
miRNA:   3'- gGUGGACGGa--CUgc---GCGUCgCGG--ACG- -5'
29144 5' -60.3 NC_006146.1 + 15037 0.69 0.568229
Target:  5'- gCGCCUgGCCagGGCcCGCcGgGCCUGCg -3'
miRNA:   3'- gGUGGA-CGGa-CUGcGCGuCgCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 15442 0.68 0.637017
Target:  5'- gCAguCCUGCCUGGCGCaGCAgaGCGagacCCUGa -3'
miRNA:   3'- gGU--GGACGGACUGCG-CGU--CGC----GGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.