Results 1 - 20 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29144 | 5' | -60.3 | NC_006146.1 | + | 159535 | 1.13 | 0.000685 |
Target: 5'- cCCACCUGCCUGACGCGCAGCGCCUGCg -3' miRNA: 3'- -GGUGGACGGACUGCGCGUCGCGGACG- -5' |
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29144 | 5' | -60.3 | NC_006146.1 | + | 72493 | 0.83 | 0.080167 |
Target: 5'- uCC-CCgUGCCUGGC-UGCAGCGCCUGCg -3' miRNA: 3'- -GGuGG-ACGGACUGcGCGUCGCGGACG- -5' |
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29144 | 5' | -60.3 | NC_006146.1 | + | 116874 | 0.79 | 0.147097 |
Target: 5'- cCgGCCcgGCCaGGCGCaGCAGUGCCUGCu -3' miRNA: 3'- -GgUGGa-CGGaCUGCG-CGUCGCGGACG- -5' |
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29144 | 5' | -60.3 | NC_006146.1 | + | 157338 | 0.79 | 0.158397 |
Target: 5'- cCgGCCUGCUUGcgcagcccgGCGCcCGGCGCCUGCa -3' miRNA: 3'- -GgUGGACGGAC---------UGCGcGUCGCGGACG- -5' |
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29144 | 5' | -60.3 | NC_006146.1 | + | 61292 | 0.78 | 0.192441 |
Target: 5'- -gGCCUGUCgcguguuugcGGCGCGCGGCGuCCUGCc -3' miRNA: 3'- ggUGGACGGa---------CUGCGCGUCGC-GGACG- -5' |
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29144 | 5' | -60.3 | NC_006146.1 | + | 127551 | 0.77 | 0.222036 |
Target: 5'- aCCcCCUGCC--ACGgGCuGCGCCUGCu -3' miRNA: 3'- -GGuGGACGGacUGCgCGuCGCGGACG- -5' |
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29144 | 5' | -60.3 | NC_006146.1 | + | 58175 | 0.74 | 0.29944 |
Target: 5'- aCCACCUGCCUGuacACGgGCcucagGGaCGcCCUGCu -3' miRNA: 3'- -GGUGGACGGAC---UGCgCG-----UC-GC-GGACG- -5' |
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29144 | 5' | -60.3 | NC_006146.1 | + | 44722 | 0.74 | 0.334337 |
Target: 5'- cCCGCUggccgGCCUGAUGCGguG-GCCgcggGCg -3' miRNA: 3'- -GGUGGa----CGGACUGCGCguCgCGGa---CG- -5' |
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29144 | 5' | -60.3 | NC_006146.1 | + | 62683 | 0.73 | 0.341664 |
Target: 5'- gUACCcGCCaaGCGCGCGGUGCgUGCg -3' miRNA: 3'- gGUGGaCGGacUGCGCGUCGCGgACG- -5' |
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29144 | 5' | -60.3 | NC_006146.1 | + | 102727 | 0.73 | 0.364335 |
Target: 5'- cCCGCgU-CCUGACGCu--GCGCCUGCc -3' miRNA: 3'- -GGUGgAcGGACUGCGcguCGCGGACG- -5' |
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29144 | 5' | -60.3 | NC_006146.1 | + | 48216 | 0.72 | 0.395327 |
Target: 5'- -gACUggaggGCCUGGCGCGCcugggugAGCGCC-GCg -3' miRNA: 3'- ggUGGa----CGGACUGCGCG-------UCGCGGaCG- -5' |
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29144 | 5' | -60.3 | NC_006146.1 | + | 46710 | 0.72 | 0.396144 |
Target: 5'- cCCACCUGCCU---GCuCAGCGCCccccuUGCg -3' miRNA: 3'- -GGUGGACGGAcugCGcGUCGCGG-----ACG- -5' |
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29144 | 5' | -60.3 | NC_006146.1 | + | 12773 | 0.72 | 0.404371 |
Target: 5'- -gACCUGCCgGACcuggaCGCGGC-CCUGCa -3' miRNA: 3'- ggUGGACGGaCUGc----GCGUCGcGGACG- -5' |
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29144 | 5' | -60.3 | NC_006146.1 | + | 71756 | 0.72 | 0.421145 |
Target: 5'- gCCACCUGCCgGuCGCuGgAGCcCCUGUg -3' miRNA: 3'- -GGUGGACGGaCuGCG-CgUCGcGGACG- -5' |
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29144 | 5' | -60.3 | NC_006146.1 | + | 7768 | 0.72 | 0.429688 |
Target: 5'- -aAUCUGCCUGGuCGUGCucuGCGcCCUGUu -3' miRNA: 3'- ggUGGACGGACU-GCGCGu--CGC-GGACG- -5' |
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29144 | 5' | -60.3 | NC_006146.1 | + | 92985 | 0.71 | 0.455914 |
Target: 5'- gCACCUGCgaGGC-CGCccgccccuGCGCCUGUu -3' miRNA: 3'- gGUGGACGgaCUGcGCGu-------CGCGGACG- -5' |
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29144 | 5' | -60.3 | NC_006146.1 | + | 153471 | 0.71 | 0.464846 |
Target: 5'- uCCGCCUGCCUccgucGACgGCGCAcaauggccGCuGCCgUGCu -3' miRNA: 3'- -GGUGGACGGA-----CUG-CGCGU--------CG-CGG-ACG- -5' |
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29144 | 5' | -60.3 | NC_006146.1 | + | 24428 | 0.71 | 0.482978 |
Target: 5'- gCCGCCUGCaaccaaUGG-GUGCuGCGCCcGCg -3' miRNA: 3'- -GGUGGACGg-----ACUgCGCGuCGCGGaCG- -5' |
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29144 | 5' | -60.3 | NC_006146.1 | + | 96318 | 0.7 | 0.490325 |
Target: 5'- gCCAUCuuUGCCggagcagUGACcuucgacagcccgGUGCAGCGCCUGUa -3' miRNA: 3'- -GGUGG--ACGG-------ACUG-------------CGCGUCGCGGACG- -5' |
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29144 | 5' | -60.3 | NC_006146.1 | + | 45555 | 0.7 | 0.491248 |
Target: 5'- gCCGCCcugGCCUccgcgagGAgcuCGCGCAGCcaggcgGCCUGCc -3' miRNA: 3'- -GGUGGa--CGGA-------CU---GCGCGUCG------CGGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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