miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29144 5' -60.3 NC_006146.1 + 96096 0.7 0.492171
Target:  5'- -aGCCUGCggGA-GCGCuGCGUCUGCc -3'
miRNA:   3'- ggUGGACGgaCUgCGCGuCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 68589 0.7 0.492171
Target:  5'- -gGCCUGCCcccgGGCGUGCaggugGGCGaUCUGCu -3'
miRNA:   3'- ggUGGACGGa---CUGCGCG-----UCGC-GGACG- -5'
29144 5' -60.3 NC_006146.1 + 106624 0.7 0.492171
Target:  5'- aCACCcGCgaUUG-C-CGCAGCGCCUGCu -3'
miRNA:   3'- gGUGGaCG--GACuGcGCGUCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 38103 0.7 0.501443
Target:  5'- cCCGCCUGCagCUGcUGaGCAGCugcgaGCCUGCa -3'
miRNA:   3'- -GGUGGACG--GACuGCgCGUCG-----CGGACG- -5'
29144 5' -60.3 NC_006146.1 + 42731 0.7 0.501443
Target:  5'- gCCGCCU-CCcGGCGuCGCuGCaucGCCUGCg -3'
miRNA:   3'- -GGUGGAcGGaCUGC-GCGuCG---CGGACG- -5'
29144 5' -60.3 NC_006146.1 + 128157 0.7 0.510792
Target:  5'- cCCugCUGCCgcaGGCGaUGCAGCgacGCCgggagGCg -3'
miRNA:   3'- -GGugGACGGa--CUGC-GCGUCG---CGGa----CG- -5'
29144 5' -60.3 NC_006146.1 + 129678 0.7 0.510792
Target:  5'- uUCGCCUgGCCacGCGCGCccAGUGCCcGCg -3'
miRNA:   3'- -GGUGGA-CGGacUGCGCG--UCGCGGaCG- -5'
29144 5' -60.3 NC_006146.1 + 104332 0.7 0.510792
Target:  5'- aCgGCCUGCCUG-CGC----CGCCUGCg -3'
miRNA:   3'- -GgUGGACGGACuGCGcgucGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 24864 0.7 0.510792
Target:  5'- gCugCaGCUgGACGCGCAGUGCCaggagcUGCc -3'
miRNA:   3'- gGugGaCGGaCUGCGCGUCGCGG------ACG- -5'
29144 5' -60.3 NC_006146.1 + 40384 0.7 0.520212
Target:  5'- gUCGCC-GCCcGGCGCGUAGUaGCCUcccGCg -3'
miRNA:   3'- -GGUGGaCGGaCUGCGCGUCG-CGGA---CG- -5'
29144 5' -60.3 NC_006146.1 + 50862 0.7 0.5297
Target:  5'- gCCACCaGUCUc-CGCGCGGgGUCUGUg -3'
miRNA:   3'- -GGUGGaCGGAcuGCGCGUCgCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 128462 0.69 0.547896
Target:  5'- gCCGCCaUGCUggcGGCGCGCAcccagcuGCGUCUcGCc -3'
miRNA:   3'- -GGUGG-ACGGa--CUGCGCGU-------CGCGGA-CG- -5'
29144 5' -60.3 NC_006146.1 + 98838 0.69 0.548859
Target:  5'- uCCACCcGUUaacgggaagaaUGGCgGCGgGGUGCCUGCg -3'
miRNA:   3'- -GGUGGaCGG-----------ACUG-CGCgUCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 58347 0.69 0.555617
Target:  5'- -gACCaGCCUGGCaUGgaccucgucuacacCAGCGCCUGCa -3'
miRNA:   3'- ggUGGaCGGACUGcGC--------------GUCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 36171 0.69 0.55852
Target:  5'- -gGCCUGgCUGGCcugGUGCAuGCauGCCUGCa -3'
miRNA:   3'- ggUGGACgGACUG---CGCGU-CG--CGGACG- -5'
29144 5' -60.3 NC_006146.1 + 44098 0.69 0.55852
Target:  5'- uCCACCUcggGCC--GCGCGCucGGCGCCgaacccggaUGCa -3'
miRNA:   3'- -GGUGGA---CGGacUGCGCG--UCGCGG---------ACG- -5'
29144 5' -60.3 NC_006146.1 + 15037 0.69 0.568229
Target:  5'- gCGCCUgGCCagGGCcCGCcGgGCCUGCg -3'
miRNA:   3'- gGUGGA-CGGa-CUGcGCGuCgCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 91207 0.69 0.568229
Target:  5'- cCCGCCUGCCUGuugGC-CGGUcUCUGCu -3'
miRNA:   3'- -GGUGGACGGACug-CGcGUCGcGGACG- -5'
29144 5' -60.3 NC_006146.1 + 15636 0.69 0.568229
Target:  5'- cCCACCUGUUUacucaGACGCugAGCGCCgaGCa -3'
miRNA:   3'- -GGUGGACGGA-----CUGCGcgUCGCGGa-CG- -5'
29144 5' -60.3 NC_006146.1 + 152474 0.69 0.577979
Target:  5'- gCugCUGCgacauCUGGCGCGU-GCGCCUuGUg -3'
miRNA:   3'- gGugGACG-----GACUGCGCGuCGCGGA-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.