miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29144 5' -60.3 NC_006146.1 + 4976 0.68 0.627146
Target:  5'- -aGCCU-CCUGgcggccucacuaACGCGgGGUGCCUGUg -3'
miRNA:   3'- ggUGGAcGGAC------------UGCGCgUCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 142868 0.69 0.591689
Target:  5'- gCCACCUGCCcuccggcugggucgGACGgucUGguGCGCUUGa -3'
miRNA:   3'- -GGUGGACGGa-------------CUGC---GCguCGCGGACg -5'
29144 5' -60.3 NC_006146.1 + 45555 0.7 0.491248
Target:  5'- gCCGCCcugGCCUccgcgagGAgcuCGCGCAGCcaggcgGCCUGCc -3'
miRNA:   3'- -GGUGGa--CGGA-------CU---GCGCGUCG------CGGACG- -5'
29144 5' -60.3 NC_006146.1 + 58175 0.74 0.29944
Target:  5'- aCCACCUGCCUGuacACGgGCcucagGGaCGcCCUGCu -3'
miRNA:   3'- -GGUGGACGGAC---UGCgCG-----UC-GC-GGACG- -5'
29144 5' -60.3 NC_006146.1 + 168225 0.67 0.68617
Target:  5'- -gGCCgGCggGAgGgGcCGGCGCCUGCa -3'
miRNA:   3'- ggUGGaCGgaCUgCgC-GUCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 156854 0.67 0.666579
Target:  5'- -aGCCaGCC-GGCGCuu-GCGCCUGCc -3'
miRNA:   3'- ggUGGaCGGaCUGCGcguCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 44098 0.69 0.55852
Target:  5'- uCCACCUcggGCC--GCGCGCucGGCGCCgaacccggaUGCa -3'
miRNA:   3'- -GGUGGA---CGGacUGCGCG--UCGCGG---------ACG- -5'
29144 5' -60.3 NC_006146.1 + 157338 0.79 0.158397
Target:  5'- cCgGCCUGCUUGcgcagcccgGCGCcCGGCGCCUGCa -3'
miRNA:   3'- -GgUGGACGGAC---------UGCGcGUCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 35497 0.68 0.646884
Target:  5'- gCCACCaGCCUGGgGUucgGCcGCGCgUGUu -3'
miRNA:   3'- -GGUGGaCGGACUgCG---CGuCGCGgACG- -5'
29144 5' -60.3 NC_006146.1 + 116874 0.79 0.147097
Target:  5'- cCgGCCcgGCCaGGCGCaGCAGUGCCUGCu -3'
miRNA:   3'- -GgUGGa-CGGaCUGCG-CGUCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 152474 0.69 0.577979
Target:  5'- gCugCUGCgacauCUGGCGCGU-GCGCCUuGUg -3'
miRNA:   3'- gGugGACG-----GACUGCGCGuCGCGGA-CG- -5'
29144 5' -60.3 NC_006146.1 + 108411 0.68 0.631094
Target:  5'- aCACCUGUccguCUGACGUggcggccagguggacGCAGUGCCcGUc -3'
miRNA:   3'- gGUGGACG----GACUGCG---------------CGUCGCGGaCG- -5'
29144 5' -60.3 NC_006146.1 + 128462 0.69 0.547896
Target:  5'- gCCGCCaUGCUggcGGCGCGCAcccagcuGCGUCUcGCc -3'
miRNA:   3'- -GGUGG-ACGGa--CUGCGCGU-------CGCGGA-CG- -5'
29144 5' -60.3 NC_006146.1 + 68589 0.7 0.492171
Target:  5'- -gGCCUGCCcccgGGCGUGCaggugGGCGaUCUGCu -3'
miRNA:   3'- ggUGGACGGa---CUGCGCG-----UCGC-GGACG- -5'
29144 5' -60.3 NC_006146.1 + 92985 0.71 0.455914
Target:  5'- gCACCUGCgaGGC-CGCccgccccuGCGCCUGUu -3'
miRNA:   3'- gGUGGACGgaCUGcGCGu-------CGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 44722 0.74 0.334337
Target:  5'- cCCGCUggccgGCCUGAUGCGguG-GCCgcggGCg -3'
miRNA:   3'- -GGUGGa----CGGACUGCGCguCgCGGa---CG- -5'
29144 5' -60.3 NC_006146.1 + 167348 0.67 0.695907
Target:  5'- aCGCUcGgCUGcACGCGCggcGGCGCCgGCc -3'
miRNA:   3'- gGUGGaCgGAC-UGCGCG---UCGCGGaCG- -5'
29144 5' -60.3 NC_006146.1 + 169157 0.67 0.68617
Target:  5'- -gGCCgGCggGAgGgGcCGGCGCCUGCa -3'
miRNA:   3'- ggUGGaCGgaCUgCgC-GUCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 110827 0.67 0.680308
Target:  5'- gCCACCagcuuccuuuauaaGCUgaagGACGCGCaggAGCGgCUGCu -3'
miRNA:   3'- -GGUGGa-------------CGGa---CUGCGCG---UCGCgGACG- -5'
29144 5' -60.3 NC_006146.1 + 48868 0.67 0.676391
Target:  5'- -aGCCgucgGCCUccaGGCGC-CAG-GCCUGCg -3'
miRNA:   3'- ggUGGa---CGGA---CUGCGcGUCgCGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.