miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29144 5' -60.3 NC_006146.1 + 159535 1.13 0.000685
Target:  5'- cCCACCUGCCUGACGCGCAGCGCCUGCg -3'
miRNA:   3'- -GGUGGACGGACUGCGCGUCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 44098 0.69 0.55852
Target:  5'- uCCACCUcggGCC--GCGCGCucGGCGCCgaacccggaUGCa -3'
miRNA:   3'- -GGUGGA---CGGacUGCGCG--UCGCGG---------ACG- -5'
29144 5' -60.3 NC_006146.1 + 142868 0.69 0.591689
Target:  5'- gCCACCUGCCcuccggcugggucgGACGgucUGguGCGCUUGa -3'
miRNA:   3'- -GGUGGACGGa-------------CUGC---GCguCGCGGACg -5'
29144 5' -60.3 NC_006146.1 + 67159 0.66 0.780321
Target:  5'- gCCGCU--CCUGA-GCGCGGCGUccgggaggaaCUGCu -3'
miRNA:   3'- -GGUGGacGGACUgCGCGUCGCG----------GACG- -5'
29144 5' -60.3 NC_006146.1 + 44722 0.74 0.334337
Target:  5'- cCCGCUggccgGCCUGAUGCGguG-GCCgcggGCg -3'
miRNA:   3'- -GGUGGa----CGGACUGCGCguCgCGGa---CG- -5'
29144 5' -60.3 NC_006146.1 + 62683 0.73 0.341664
Target:  5'- gUACCcGCCaaGCGCGCGGUGCgUGCg -3'
miRNA:   3'- gGUGGaCGGacUGCGCGUCGCGgACG- -5'
29144 5' -60.3 NC_006146.1 + 92985 0.71 0.455914
Target:  5'- gCACCUGCgaGGC-CGCccgccccuGCGCCUGUu -3'
miRNA:   3'- gGUGGACGgaCUGcGCGu-------CGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 153471 0.71 0.464846
Target:  5'- uCCGCCUGCCUccgucGACgGCGCAcaauggccGCuGCCgUGCu -3'
miRNA:   3'- -GGUGGACGGA-----CUG-CGCGU--------CG-CGG-ACG- -5'
29144 5' -60.3 NC_006146.1 + 68589 0.7 0.492171
Target:  5'- -gGCCUGCCcccgGGCGUGCaggugGGCGaUCUGCu -3'
miRNA:   3'- ggUGGACGGa---CUGCGCG-----UCGC-GGACG- -5'
29144 5' -60.3 NC_006146.1 + 36171 0.69 0.55852
Target:  5'- -gGCCUGgCUGGCcugGUGCAuGCauGCCUGCa -3'
miRNA:   3'- ggUGGACgGACUG---CGCGU-CG--CGGACG- -5'
29144 5' -60.3 NC_006146.1 + 128157 0.7 0.510792
Target:  5'- cCCugCUGCCgcaGGCGaUGCAGCgacGCCgggagGCg -3'
miRNA:   3'- -GGugGACGGa--CUGC-GCGUCG---CGGa----CG- -5'
29144 5' -60.3 NC_006146.1 + 45555 0.7 0.491248
Target:  5'- gCCGCCcugGCCUccgcgagGAgcuCGCGCAGCcaggcgGCCUGCc -3'
miRNA:   3'- -GGUGGa--CGGA-------CU---GCGCGUCG------CGGACG- -5'
29144 5' -60.3 NC_006146.1 + 116874 0.79 0.147097
Target:  5'- cCgGCCcgGCCaGGCGCaGCAGUGCCUGCu -3'
miRNA:   3'- -GgUGGa-CGGaCUGCG-CGUCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 128462 0.69 0.547896
Target:  5'- gCCGCCaUGCUggcGGCGCGCAcccagcuGCGUCUcGCc -3'
miRNA:   3'- -GGUGG-ACGGa--CUGCGCGU-------CGCGGA-CG- -5'
29144 5' -60.3 NC_006146.1 + 157338 0.79 0.158397
Target:  5'- cCgGCCUGCUUGcgcagcccgGCGCcCGGCGCCUGCa -3'
miRNA:   3'- -GgUGGACGGAC---------UGCGcGUCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 96318 0.7 0.490325
Target:  5'- gCCAUCuuUGCCggagcagUGACcuucgacagcccgGUGCAGCGCCUGUa -3'
miRNA:   3'- -GGUGG--ACGG-------ACUG-------------CGCGUCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 98838 0.69 0.548859
Target:  5'- uCCACCcGUUaacgggaagaaUGGCgGCGgGGUGCCUGCg -3'
miRNA:   3'- -GGUGGaCGG-----------ACUG-CGCgUCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 152474 0.69 0.577979
Target:  5'- gCugCUGCgacauCUGGCGCGU-GCGCCUuGUg -3'
miRNA:   3'- gGugGACG-----GACUGCGCGuCGCGGA-CG- -5'
29144 5' -60.3 NC_006146.1 + 58175 0.74 0.29944
Target:  5'- aCCACCUGCCUGuacACGgGCcucagGGaCGcCCUGCu -3'
miRNA:   3'- -GGUGGACGGAC---UGCgCG-----UC-GC-GGACG- -5'
29144 5' -60.3 NC_006146.1 + 48216 0.72 0.395327
Target:  5'- -gACUggaggGCCUGGCGCGCcugggugAGCGCC-GCg -3'
miRNA:   3'- ggUGGa----CGGACUGCGCG-------UCGCGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.