miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29144 5' -60.3 NC_006146.1 + 14321 0.66 0.780321
Target:  5'- gCACCUGCUggaGAacucaCGCAGgGCCguUGCg -3'
miRNA:   3'- gGUGGACGGa--CUgc---GCGUCgCGG--ACG- -5'
29144 5' -60.3 NC_006146.1 + 114367 0.66 0.734277
Target:  5'- -gGCCcGCgUGACGCGuCAGCugcugaugGCCgGCg -3'
miRNA:   3'- ggUGGaCGgACUGCGC-GUCG--------CGGaCG- -5'
29144 5' -60.3 NC_006146.1 + 39663 0.66 0.733332
Target:  5'- aCUGCCUugGCCUuggaggcGGCGgGCuccuGgGCCUGCa -3'
miRNA:   3'- -GGUGGA--CGGA-------CUGCgCGu---CgCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 120745 0.66 0.724788
Target:  5'- cCCcCCUGguCCUGACGaCG-AGCGCUgGCg -3'
miRNA:   3'- -GGuGGAC--GGACUGC-GCgUCGCGGaCG- -5'
29144 5' -60.3 NC_006146.1 + 8513 0.66 0.724788
Target:  5'- cCCACCgggGUCccgGGCGCGgGcGCGCCaagggGCu -3'
miRNA:   3'- -GGUGGa--CGGa--CUGCGCgU-CGCGGa----CG- -5'
29144 5' -60.3 NC_006146.1 + 40955 0.66 0.724788
Target:  5'- cCCACCccagguccgUGCCguagaccgccGugGUGCcGCGCCgGCg -3'
miRNA:   3'- -GGUGG---------ACGGa---------CugCGCGuCGCGGaCG- -5'
29144 5' -60.3 NC_006146.1 + 112512 0.66 0.734277
Target:  5'- gCCACUgcagaugaugUGCCUGugGCauuuGCAGgCGCUggUGUa -3'
miRNA:   3'- -GGUGG----------ACGGACugCG----CGUC-GCGG--ACG- -5'
29144 5' -60.3 NC_006146.1 + 120197 0.66 0.743684
Target:  5'- aCGCCggcuuucagGCCUGcCG-GuCGGUGCCUGUg -3'
miRNA:   3'- gGUGGa--------CGGACuGCgC-GUCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 129900 0.66 0.743684
Target:  5'- aCCACgUGUCUcucUGCGCccuggGGCGCCgGCg -3'
miRNA:   3'- -GGUGgACGGAcu-GCGCG-----UCGCGGaCG- -5'
29144 5' -60.3 NC_006146.1 + 41769 0.66 0.734277
Target:  5'- cCCGCCggagGCCc--UGCGCccgGGCGCCcGCu -3'
miRNA:   3'- -GGUGGa---CGGacuGCGCG---UCGCGGaCG- -5'
29144 5' -60.3 NC_006146.1 + 42688 0.66 0.739931
Target:  5'- gCGCCgaaagagcgucugGCCcGGCGcCGCGGCGCCc-- -3'
miRNA:   3'- gGUGGa------------CGGaCUGC-GCGUCGCGGacg -5'
29144 5' -60.3 NC_006146.1 + 144693 0.66 0.743684
Target:  5'- gCGCCcuUGCCUGGagGCGagacugGGCGgCUGCg -3'
miRNA:   3'- gGUGG--ACGGACUg-CGCg-----UCGCgGACG- -5'
29144 5' -60.3 NC_006146.1 + 14133 0.66 0.777636
Target:  5'- gCgGCCUacaGCCaggUGuACGCGCuggccguggagcugAGCGUCUGCg -3'
miRNA:   3'- -GgUGGA---CGG---AC-UGCGCG--------------UCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 44780 0.66 0.771327
Target:  5'- -uGCCgUGCCgggcucaggGGgGCGCAGCGUCUa- -3'
miRNA:   3'- ggUGG-ACGGa--------CUgCGCGUCGCGGAcg -5'
29144 5' -60.3 NC_006146.1 + 168096 0.66 0.762217
Target:  5'- aCCGCCUugGUCUGGaagGCcuGCuGGCGCCUGg -3'
miRNA:   3'- -GGUGGA--CGGACUg--CG--CG-UCGCGGACg -5'
29144 5' -60.3 NC_006146.1 + 108571 0.66 0.762217
Target:  5'- -gGCUUGgCUGGCG-GCGGCGUCUcugGCc -3'
miRNA:   3'- ggUGGACgGACUGCgCGUCGCGGA---CG- -5'
29144 5' -60.3 NC_006146.1 + 104659 0.66 0.762217
Target:  5'- cCCACCguggagaaUGCCUG-CGCcgcgauagagggGCAGCuggGCCUGg -3'
miRNA:   3'- -GGUGG--------ACGGACuGCG------------CGUCG---CGGACg -5'
29144 5' -60.3 NC_006146.1 + 10835 0.66 0.753
Target:  5'- gCCACaggUGCCUGACuGUGCcGCuccUCUGCg -3'
miRNA:   3'- -GGUGg--ACGGACUG-CGCGuCGc--GGACG- -5'
29144 5' -60.3 NC_006146.1 + 60363 0.66 0.752073
Target:  5'- -aGCCUcuuugaacaggagGUCUccGAgGUGCAGCGCCUGg -3'
miRNA:   3'- ggUGGA-------------CGGA--CUgCGCGUCGCGGACg -5'
29144 5' -60.3 NC_006146.1 + 140688 0.66 0.743684
Target:  5'- cCgGCCaGCCcGGCggGCGCAGCGgcccUCUGCu -3'
miRNA:   3'- -GgUGGaCGGaCUG--CGCGUCGC----GGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.