miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29144 5' -60.3 NC_006146.1 + 170143 0.67 0.695907
Target:  5'- aCGCUcGgCUGcACGCGCggcGGCGCCgGCc -3'
miRNA:   3'- gGUGGaCgGAC-UGCGCG---UCGCGGaCG- -5'
29144 5' -60.3 NC_006146.1 + 169212 0.67 0.695907
Target:  5'- aCGCUcGgCUGcACGCGCggcGGCGCCgGCc -3'
miRNA:   3'- gGUGGaCgGAC-UGCGCG---UCGCGGaCG- -5'
29144 5' -60.3 NC_006146.1 + 169157 0.67 0.68617
Target:  5'- -gGCCgGCggGAgGgGcCGGCGCCUGCa -3'
miRNA:   3'- ggUGGaCGgaCUgCgC-GUCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 168280 0.67 0.695907
Target:  5'- aCGCUcGgCUGcACGCGCggcGGCGCCgGCc -3'
miRNA:   3'- gGUGGaCgGAC-UGCGCG---UCGCGGaCG- -5'
29144 5' -60.3 NC_006146.1 + 168225 0.67 0.68617
Target:  5'- -gGCCgGCggGAgGgGcCGGCGCCUGCa -3'
miRNA:   3'- ggUGGaCGgaCUgCgC-GUCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 168096 0.66 0.762217
Target:  5'- aCCGCCUugGUCUGGaagGCcuGCuGGCGCCUGg -3'
miRNA:   3'- -GGUGGA--CGGACUg--CG--CG-UCGCGGACg -5'
29144 5' -60.3 NC_006146.1 + 167348 0.67 0.695907
Target:  5'- aCGCUcGgCUGcACGCGCggcGGCGCCgGCc -3'
miRNA:   3'- gGUGGaCgGAC-UGCGCG---UCGCGGaCG- -5'
29144 5' -60.3 NC_006146.1 + 167293 0.67 0.68617
Target:  5'- -gGCCgGCggGAgGgGcCGGCGCCUGCa -3'
miRNA:   3'- ggUGGaCGgaCUgCgC-GUCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 162323 0.66 0.780321
Target:  5'- gCAuuUCUGCCUGGUGCuGCAGCccgGgCUGCa -3'
miRNA:   3'- gGU--GGACGGACUGCG-CGUCG---CgGACG- -5'
29144 5' -60.3 NC_006146.1 + 159535 1.13 0.000685
Target:  5'- cCCACCUGCCUGACGCGCAGCGCCUGCg -3'
miRNA:   3'- -GGUGGACGGACUGCGCGUCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 159481 0.67 0.705594
Target:  5'- gCCACCUugGCCUGGuCcUGCAG-GCuCUGCu -3'
miRNA:   3'- -GGUGGA--CGGACU-GcGCGUCgCG-GACG- -5'
29144 5' -60.3 NC_006146.1 + 157338 0.79 0.158397
Target:  5'- cCgGCCUGCUUGcgcagcccgGCGCcCGGCGCCUGCa -3'
miRNA:   3'- -GgUGGACGGAC---------UGCGcGUCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 156854 0.67 0.666579
Target:  5'- -aGCCaGCC-GGCGCuu-GCGCCUGCc -3'
miRNA:   3'- ggUGGaCGGaCUGCGcguCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 156151 0.66 0.771327
Target:  5'- cCCGCCUGCCUGACcuCGUucucaaagAGCcCCgagaccgGCu -3'
miRNA:   3'- -GGUGGACGGACUGc-GCG--------UCGcGGa------CG- -5'
29144 5' -60.3 NC_006146.1 + 154980 0.66 0.753
Target:  5'- gCACg-GCCU--CGCGCAGgGCCcgGCa -3'
miRNA:   3'- gGUGgaCGGAcuGCGCGUCgCGGa-CG- -5'
29144 5' -60.3 NC_006146.1 + 154658 0.67 0.676391
Target:  5'- gCCGCCgGCUgcaccgugGugGCGgGGgGCgCUGCu -3'
miRNA:   3'- -GGUGGaCGGa-------CugCGCgUCgCG-GACG- -5'
29144 5' -60.3 NC_006146.1 + 153471 0.71 0.464846
Target:  5'- uCCGCCUGCCUccgucGACgGCGCAcaauggccGCuGCCgUGCu -3'
miRNA:   3'- -GGUGGACGGA-----CUG-CGCGU--------CG-CGG-ACG- -5'
29144 5' -60.3 NC_006146.1 + 152474 0.69 0.577979
Target:  5'- gCugCUGCgacauCUGGCGCGU-GCGCCUuGUg -3'
miRNA:   3'- gGugGACG-----GACUGCGCGuCGCGGA-CG- -5'
29144 5' -60.3 NC_006146.1 + 149842 0.68 0.617279
Target:  5'- gCgGCCaggGCCUcGGCgaaGCGCAGCGUCUcGCc -3'
miRNA:   3'- -GgUGGa--CGGA-CUG---CGCGUCGCGGA-CG- -5'
29144 5' -60.3 NC_006146.1 + 149643 0.68 0.607422
Target:  5'- gCACCagGUCgagcACGCGCcggcagcGCGCCUGCa -3'
miRNA:   3'- gGUGGa-CGGac--UGCGCGu------CGCGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.