miRNA display CGI


Results 41 - 60 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 3' -53.2 NC_006146.1 + 42371 0.66 0.96777
Target:  5'- cGCGccGCCAGGGUggGCGA---GGGGCg -3'
miRNA:   3'- -CGUu-UGGUCUCGgaCGCUaucUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 43435 0.69 0.894418
Target:  5'- cGUccAUCAGuAGCCUGCGGgccgccacaucUGGAGcGGCa -3'
miRNA:   3'- -CGuuUGGUC-UCGGACGCU-----------AUCUC-CCG- -5'
29145 3' -53.2 NC_006146.1 + 44002 0.68 0.935426
Target:  5'- aGUAGGCCGGAGgUggaUGUGG-GGAGGGUc -3'
miRNA:   3'- -CGUUUGGUCUCgG---ACGCUaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 44111 0.7 0.873251
Target:  5'- cCAGGCCccGGCUgcccgGCGAggagGGGGGGCa -3'
miRNA:   3'- cGUUUGGucUCGGa----CGCUa---UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 45026 0.7 0.850084
Target:  5'- uGUuuACCAGAagGCCUuCGA-GGAGGGCc -3'
miRNA:   3'- -CGuuUGGUCU--CGGAcGCUaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 45045 0.68 0.924936
Target:  5'- -gAGGCCGGGGCCgGCucccUAG-GGGCg -3'
miRNA:   3'- cgUUUGGUCUCGGaCGcu--AUCuCCCG- -5'
29145 3' -53.2 NC_006146.1 + 45532 0.7 0.865743
Target:  5'- uGCAcaagaacguGACCAGGGCCagGCaggGGAGGGa -3'
miRNA:   3'- -CGU---------UUGGUCUCGGa-CGcuaUCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 46409 0.66 0.973604
Target:  5'- -gAGACCAG-GCCgagucccGCGuagaacgAGGGGGCc -3'
miRNA:   3'- cgUUUGGUCuCGGa------CGCua-----UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 47046 0.67 0.957392
Target:  5'- uGCGAGaaGGGGCCggucgccggUGuCGGUgAGGGGGCg -3'
miRNA:   3'- -CGUUUggUCUCGG---------AC-GCUA-UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 47145 0.69 0.894418
Target:  5'- gGCGuAGCgCAcGAGCCUGUcccuGA-GGAGGGCa -3'
miRNA:   3'- -CGU-UUG-GU-CUCGGACG----CUaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 47670 0.69 0.887593
Target:  5'- cGCGgcGGCCAGGGUCUcGUGgAUGGAggacuuGGGCg -3'
miRNA:   3'- -CGU--UUGGUCUCGGA-CGC-UAUCU------CCCG- -5'
29145 3' -53.2 NC_006146.1 + 47967 0.68 0.924936
Target:  5'- uGCGAuuucuuugGCCAGAGCgUGgGGUcAGAGguGGCu -3'
miRNA:   3'- -CGUU--------UGGUCUCGgACgCUA-UCUC--CCG- -5'
29145 3' -53.2 NC_006146.1 + 48229 0.66 0.978632
Target:  5'- gGCGcGCCuGGGUgaGCGccgcgcGGAGGGCc -3'
miRNA:   3'- -CGUuUGGuCUCGgaCGCua----UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 49004 0.7 0.850084
Target:  5'- uGCAGACCggcuaGGAGCCgcaggGCGuucuccGGGGCg -3'
miRNA:   3'- -CGUUUGG-----UCUCGGa----CGCuauc--UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 49054 0.69 0.907354
Target:  5'- cGCGAGCguaGGGGgCUGgauCGAaGGAGGGCu -3'
miRNA:   3'- -CGUUUGg--UCUCgGAC---GCUaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 49291 0.67 0.953476
Target:  5'- cCAGGCaGGAGUCUuccGCGAUgacgagcugugAGGGGGCu -3'
miRNA:   3'- cGUUUGgUCUCGGA---CGCUA-----------UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 50026 0.7 0.873251
Target:  5'- uGC-AGCCGGGGUCgagGCGcaGGAGGGa -3'
miRNA:   3'- -CGuUUGGUCUCGGa--CGCuaUCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 50710 0.7 0.858019
Target:  5'- gGCAGGCCuGAaaGCCgGCGuugagcGGGGGCg -3'
miRNA:   3'- -CGUUUGGuCU--CGGaCGCuau---CUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 51644 0.67 0.960357
Target:  5'- gGUGAcuACCGGAGCagggagGCGAguaagaacugaaGGGGGGCg -3'
miRNA:   3'- -CGUU--UGGUCUCGga----CGCUa-----------UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 51990 0.66 0.969004
Target:  5'- uGCGGGCCGGGcGCgUuucggacgagagagaGCGA--GAGGGCa -3'
miRNA:   3'- -CGUUUGGUCU-CGgA---------------CGCUauCUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.