miRNA display CGI


Results 21 - 40 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 3' -53.2 NC_006146.1 + 19038 0.66 0.972782
Target:  5'- gGCAGGCCgggucucgggucugGGGGUCUGUGGUGGuGaGCc -3'
miRNA:   3'- -CGUUUGG--------------UCUCGGACGCUAUCuCcCG- -5'
29145 3' -53.2 NC_006146.1 + 19957 0.7 0.873251
Target:  5'- gGCAGAUCAGGGCCgggggcgucUGCGAggucaGGAGGc- -3'
miRNA:   3'- -CGUUUGGUCUCGG---------ACGCUa----UCUCCcg -5'
29145 3' -53.2 NC_006146.1 + 20575 0.69 0.894417
Target:  5'- aCAGACUAGccGGCCUGCGccc--GGGCg -3'
miRNA:   3'- cGUUUGGUC--UCGGACGCuaucuCCCG- -5'
29145 3' -53.2 NC_006146.1 + 22116 0.66 0.972782
Target:  5'- gGCAGGCCgggucucgggucugGGGGUCUGUGGUGGuGaGCc -3'
miRNA:   3'- -CGUUUGG--------------UCUCGGACGCUAUCuCcCG- -5'
29145 3' -53.2 NC_006146.1 + 23887 0.68 0.929778
Target:  5'- uCAAACUaacgaggAGGGaa-GCGAUGGGGGGCg -3'
miRNA:   3'- cGUUUGG-------UCUCggaCGCUAUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 24226 0.68 0.940303
Target:  5'- -gGGGCCGGGGCCgcccaccGCccgGGAGGGUu -3'
miRNA:   3'- cgUUUGGUCUCGGa------CGcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 25194 0.66 0.972782
Target:  5'- gGCAGGCCgggucucgggucugGGGGUCUGUGGUGGuGaGCc -3'
miRNA:   3'- -CGUUUGG--------------UCUCGGACGCUAUCuCcCG- -5'
29145 3' -53.2 NC_006146.1 + 28272 0.66 0.972782
Target:  5'- gGCAGGCCgggucucgggucugGGGGUCUGUGGUGGuGaGCc -3'
miRNA:   3'- -CGUUUGG--------------UCUCGGACGCUAUCuCcCG- -5'
29145 3' -53.2 NC_006146.1 + 34074 0.67 0.957392
Target:  5'- --uGGCaCGGGGCCgGgGGUcccGGGGGGCa -3'
miRNA:   3'- cguUUG-GUCUCGGaCgCUA---UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 34147 0.74 0.659884
Target:  5'- gGCcucCCGGAGCCccgGCGAgggUGGGGGGUg -3'
miRNA:   3'- -CGuuuGGUCUCGGa--CGCU---AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 36226 0.66 0.96777
Target:  5'- cGCAAGCC--GGCCgGgGAggaGGcAGGGCg -3'
miRNA:   3'- -CGUUUGGucUCGGaCgCUa--UC-UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 40018 0.68 0.944935
Target:  5'- gGCGuAGCagGGGGCCUGCu---GGGGGCc -3'
miRNA:   3'- -CGU-UUGg-UCUCGGACGcuauCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 40822 0.66 0.978632
Target:  5'- gGCcuuGGCCAuGAGCUUGguaaGGggcAGGGGGCg -3'
miRNA:   3'- -CGu--UUGGU-CUCGGACg---CUa--UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 40889 0.73 0.741275
Target:  5'- -gGAGCCGGGGCCucgucUGCGAUcc-GGGCg -3'
miRNA:   3'- cgUUUGGUCUCGG-----ACGCUAucuCCCG- -5'
29145 3' -53.2 NC_006146.1 + 41012 0.71 0.816379
Target:  5'- gGCGAAgagccgggcgUCAGAGCCgUGgGA-GGAGGGCc -3'
miRNA:   3'- -CGUUU----------GGUCUCGG-ACgCUaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 41052 0.72 0.760832
Target:  5'- cGCGgcGGCCcugGGGGCCUcGgGGUGGAGGGa -3'
miRNA:   3'- -CGU--UUGG---UCUCGGA-CgCUAUCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 41355 0.68 0.919321
Target:  5'- ----cCCAGGGCCUgGCGGUGGu-GGCc -3'
miRNA:   3'- cguuuGGUCUCGGA-CGCUAUCucCCG- -5'
29145 3' -53.2 NC_006146.1 + 41408 0.66 0.970791
Target:  5'- cGCAGACgUAGAcgGCC-GCGcUGGGuGGGCg -3'
miRNA:   3'- -CGUUUG-GUCU--CGGaCGCuAUCU-CCCG- -5'
29145 3' -53.2 NC_006146.1 + 41486 0.71 0.825085
Target:  5'- uGCAGauGCgGGAGUUUGUGGUcuGGGGCa -3'
miRNA:   3'- -CGUU--UGgUCUCGGACGCUAucUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 41863 0.66 0.976215
Target:  5'- gGCu-ACCGGGGCCUcGUGA-AGAGGu- -3'
miRNA:   3'- -CGuuUGGUCUCGGA-CGCUaUCUCCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.