Results 21 - 40 of 216 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29145 | 3' | -53.2 | NC_006146.1 | + | 49004 | 0.7 | 0.850084 |
Target: 5'- uGCAGACCggcuaGGAGCCgcaggGCGuucuccGGGGCg -3' miRNA: 3'- -CGUUUGG-----UCUCGGa----CGCuauc--UCCCG- -5' |
|||||||
29145 | 3' | -53.2 | NC_006146.1 | + | 41012 | 0.71 | 0.816379 |
Target: 5'- gGCGAAgagccgggcgUCAGAGCCgUGgGA-GGAGGGCc -3' miRNA: 3'- -CGUUU----------GGUCUCGG-ACgCUaUCUCCCG- -5' |
|||||||
29145 | 3' | -53.2 | NC_006146.1 | + | 34147 | 0.74 | 0.659884 |
Target: 5'- gGCcucCCGGAGCCccgGCGAgggUGGGGGGUg -3' miRNA: 3'- -CGuuuGGUCUCGGa--CGCU---AUCUCCCG- -5' |
|||||||
29145 | 3' | -53.2 | NC_006146.1 | + | 159902 | 0.78 | 0.477189 |
Target: 5'- -gAGGCCGGGGCCcucgaaGAUGGGGGGCa -3' miRNA: 3'- cgUUUGGUCUCGGacg---CUAUCUCCCG- -5' |
|||||||
29145 | 3' | -53.2 | NC_006146.1 | + | 169021 | 0.69 | 0.887593 |
Target: 5'- gGCAcuguGCCAGGGCCUuCGGgacgGGAGGccgGCg -3' miRNA: 3'- -CGUu---UGGUCUCGGAcGCUa---UCUCC---CG- -5' |
|||||||
29145 | 3' | -53.2 | NC_006146.1 | + | 91696 | 0.7 | 0.873251 |
Target: 5'- cGCGGGCUAGA-CCUGUGGcUGGAGGa- -3' miRNA: 3'- -CGUUUGGUCUcGGACGCU-AUCUCCcg -5' |
|||||||
29145 | 3' | -53.2 | NC_006146.1 | + | 54997 | 0.71 | 0.798459 |
Target: 5'- gGguGGCCGGaAGCCccccggGCGGgauGGGGGCg -3' miRNA: 3'- -CguUUGGUC-UCGGa-----CGCUau-CUCCCG- -5' |
|||||||
29145 | 3' | -53.2 | NC_006146.1 | + | 98487 | 0.78 | 0.467657 |
Target: 5'- cGCGGACCAaggucagcaGAGacuCCUGUGAUGGAGGGg -3' miRNA: 3'- -CGUUUGGU---------CUC---GGACGCUAUCUCCCg -5' |
|||||||
29145 | 3' | -53.2 | NC_006146.1 | + | 68376 | 0.7 | 0.865744 |
Target: 5'- gGC-AACCAGGGCCU-UGAUGacgacGGGGGUg -3' miRNA: 3'- -CGuUUGGUCUCGGAcGCUAU-----CUCCCG- -5' |
|||||||
29145 | 3' | -53.2 | NC_006146.1 | + | 68080 | 0.78 | 0.430554 |
Target: 5'- aGCAAGCgCAGAGCCcccgcGCGAUccaGGuGGGCg -3' miRNA: 3'- -CGUUUG-GUCUCGGa----CGCUA---UCuCCCG- -5' |
|||||||
29145 | 3' | -53.2 | NC_006146.1 | + | 56219 | 0.71 | 0.798459 |
Target: 5'- aCGAGCCGcGAGCCguccaGCGGguccgcGGGGGCg -3' miRNA: 3'- cGUUUGGU-CUCGGa----CGCUau----CUCCCG- -5' |
|||||||
29145 | 3' | -53.2 | NC_006146.1 | + | 66918 | 0.7 | 0.850084 |
Target: 5'- uGCAGACCgGGAGCCUGgGAUuGAaguacucgugccGGGa -3' miRNA: 3'- -CGUUUGG-UCUCGGACgCUAuCU------------CCCg -5' |
|||||||
29145 | 3' | -53.2 | NC_006146.1 | + | 168336 | 0.73 | 0.735328 |
Target: 5'- -gGGGCCGGGGCCUgGCGggGGccagcgcggggucccGGGGCg -3' miRNA: 3'- cgUUUGGUCUCGGA-CGCuaUC---------------UCCCG- -5' |
|||||||
29145 | 3' | -53.2 | NC_006146.1 | + | 149977 | 0.73 | 0.711227 |
Target: 5'- -gGGGCCAGGGCCUGCaGGUcggccGGAcucaGGGCc -3' miRNA: 3'- cgUUUGGUCUCGGACG-CUA-----UCU----CCCG- -5' |
|||||||
29145 | 3' | -53.2 | NC_006146.1 | + | 167304 | 0.75 | 0.618337 |
Target: 5'- -gGGGCCGGcGCCUGCag-GGGGGGCc -3' miRNA: 3'- cgUUUGGUCuCGGACGcuaUCUCCCG- -5' |
|||||||
29145 | 3' | -53.2 | NC_006146.1 | + | 57043 | 0.77 | 0.516224 |
Target: 5'- gGCGAagccGCCAGGGUUgagGCGggAGGGGGCc -3' miRNA: 3'- -CGUU----UGGUCUCGGa--CGCuaUCUCCCG- -5' |
|||||||
29145 | 3' | -53.2 | NC_006146.1 | + | 43435 | 0.69 | 0.894418 |
Target: 5'- cGUccAUCAGuAGCCUGCGGgccgccacaucUGGAGcGGCa -3' miRNA: 3'- -CGuuUGGUC-UCGGACGCU-----------AUCUC-CCG- -5' |
|||||||
29145 | 3' | -53.2 | NC_006146.1 | + | 169953 | 0.69 | 0.887593 |
Target: 5'- gGCAcuguGCCAGGGCCUuCGGgacgGGAGGccgGCg -3' miRNA: 3'- -CGUu---UGGUCUCGGAcGCUa---UCUCC---CG- -5' |
|||||||
29145 | 3' | -53.2 | NC_006146.1 | + | 47670 | 0.69 | 0.887593 |
Target: 5'- cGCGgcGGCCAGGGUCUcGUGgAUGGAggacuuGGGCg -3' miRNA: 3'- -CGU--UUGGUCUCGGA-CGC-UAUCU------CCCG- -5' |
|||||||
29145 | 3' | -53.2 | NC_006146.1 | + | 122108 | 0.7 | 0.879818 |
Target: 5'- gGCGgaGACCGGGGCCUucgugaaGCuGGUGGAGacGGCc -3' miRNA: 3'- -CGU--UUGGUCUCGGA-------CG-CUAUCUC--CCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home