miRNA display CGI


Results 21 - 40 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 3' -53.2 NC_006146.1 + 160402 1.15 0.002213
Target:  5'- cGCAAACCAGAGCCUGCGAUAGAGGGCg -3'
miRNA:   3'- -CGUUUGGUCUCGGACGCUAUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 134574 0.69 0.886898
Target:  5'- aGCAGGCU-GAGCUgugcaguuuugauUGUGGggGGAGGGCu -3'
miRNA:   3'- -CGUUUGGuCUCGG-------------ACGCUa-UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 147179 0.7 0.880536
Target:  5'- cGCAGACCGGcGCCccuucgcccggUGCGcagaGGAGGGg -3'
miRNA:   3'- -CGUUUGGUCuCGG-----------ACGCua--UCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 41486 0.71 0.825085
Target:  5'- uGCAGauGCgGGAGUUUGUGGUcuGGGGCa -3'
miRNA:   3'- -CGUU--UGgUCUCGGACGCUAucUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 94933 0.73 0.720318
Target:  5'- aCGAugCAGgggacguGGCCgcUGCGGUAGAGGGg -3'
miRNA:   3'- cGUUugGUC-------UCGG--ACGCUAUCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 99058 0.69 0.887593
Target:  5'- gGCGggUgucggCGGuGCCguaGUGGUGGAGGGCc -3'
miRNA:   3'- -CGUuuG-----GUCuCGGa--CGCUAUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 167157 0.69 0.887593
Target:  5'- gGCAcuguGCCAGGGCCUuCGGgacgGGAGGccgGCg -3'
miRNA:   3'- -CGUu---UGGUCUCGGAcGCUa---UCUCC---CG- -5'
29145 3' -53.2 NC_006146.1 + 168236 0.75 0.618337
Target:  5'- -gGGGCCGGcGCCUGCag-GGGGGGCc -3'
miRNA:   3'- cgUUUGGUCuCGGACGcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 119945 0.7 0.850084
Target:  5'- cGCugcuGCCGGAgGUCU-CGGUGGGGGGUc -3'
miRNA:   3'- -CGuu--UGGUCU-CGGAcGCUAUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 49004 0.7 0.850084
Target:  5'- uGCAGACCggcuaGGAGCCgcaggGCGuucuccGGGGCg -3'
miRNA:   3'- -CGUUUGG-----UCUCGGa----CGCuauc--UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 151296 0.75 0.597595
Target:  5'- -aAGGCCAGGGCC-GUGuaGGAGGGCc -3'
miRNA:   3'- cgUUUGGUCUCGGaCGCuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 166649 0.76 0.556482
Target:  5'- cGCGGacGCCAGAGCgaGCGGgaaGGGGGaGCg -3'
miRNA:   3'- -CGUU--UGGUCUCGgaCGCUa--UCUCC-CG- -5'
29145 3' -53.2 NC_006146.1 + 47145 0.69 0.894418
Target:  5'- gGCGuAGCgCAcGAGCCUGUcccuGA-GGAGGGCa -3'
miRNA:   3'- -CGU-UUG-GU-CUCGGACG----CUaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 155157 0.69 0.894418
Target:  5'- aGCGGGCCAGGGCCa-CGuugcuGGGCg -3'
miRNA:   3'- -CGUUUGGUCUCGGacGCuaucuCCCG- -5'
29145 3' -53.2 NC_006146.1 + 122108 0.7 0.879818
Target:  5'- gGCGgaGACCGGGGCCUucgugaaGCuGGUGGAGacGGCc -3'
miRNA:   3'- -CGU--UUGGUCUCGGA-------CG-CUAUCUC--CCG- -5'
29145 3' -53.2 NC_006146.1 + 169268 0.73 0.735328
Target:  5'- -gGGGCCGGGGCCUgGCGggGGccagcgcggggucccGGGGCg -3'
miRNA:   3'- cgUUUGGUCUCGGA-CGCuaUC---------------UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 167404 0.73 0.735328
Target:  5'- -gGGGCCGGGGCCUgGCGggGGccagcgcggggucccGGGGCg -3'
miRNA:   3'- cgUUUGGUCUCGGA-CGCuaUC---------------UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 57043 0.77 0.516224
Target:  5'- gGCGAagccGCCAGGGUUgagGCGggAGGGGGCc -3'
miRNA:   3'- -CGUU----UGGUCUCGGa--CGCuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 52073 0.7 0.850084
Target:  5'- aGCAuGACgGGAgGgCUGCGGUcGGGGGCc -3'
miRNA:   3'- -CGU-UUGgUCU-CgGACGCUAuCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 137975 0.7 0.850084
Target:  5'- cCGGGCCucccgGGGGCCcgGCGGggUGGGGGGUg -3'
miRNA:   3'- cGUUUGG-----UCUCGGa-CGCU--AUCUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.