miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 3' -53.2 NC_006146.1 + 169268 0.73 0.735328
Target:  5'- -gGGGCCGGGGCCUgGCGggGGccagcgcggggucccGGGGCg -3'
miRNA:   3'- cgUUUGGUCUCGGA-CGCuaUC---------------UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 160402 1.15 0.002213
Target:  5'- cGCAAACCAGAGCCUGCGAUAGAGGGCg -3'
miRNA:   3'- -CGUUUGGUCUCGGACGCUAUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 68080 0.78 0.430554
Target:  5'- aGCAAGCgCAGAGCCcccgcGCGAUccaGGuGGGCg -3'
miRNA:   3'- -CGUUUG-GUCUCGGa----CGCUA---UCuCCCG- -5'
29145 3' -53.2 NC_006146.1 + 169168 0.75 0.618337
Target:  5'- -gGGGCCGGcGCCUGCag-GGGGGGCc -3'
miRNA:   3'- cgUUUGGUCuCGGACGcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 34147 0.74 0.659884
Target:  5'- gGCcucCCGGAGCCccgGCGAgggUGGGGGGUg -3'
miRNA:   3'- -CGuuuGGUCUCGGa--CGCU---AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 98487 0.78 0.467657
Target:  5'- cGCGGACCAaggucagcaGAGacuCCUGUGAUGGAGGGg -3'
miRNA:   3'- -CGUUUGGU---------CUC---GGACGCUAUCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 151296 0.75 0.597595
Target:  5'- -aAGGCCAGGGCC-GUGuaGGAGGGCc -3'
miRNA:   3'- cgUUUGGUCUCGGaCGCuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 168236 0.75 0.618337
Target:  5'- -gGGGCCGGcGCCUGCag-GGGGGGCc -3'
miRNA:   3'- cgUUUGGUCuCGGACGcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 168336 0.73 0.735328
Target:  5'- -gGGGCCGGGGCCUgGCGggGGccagcgcggggucccGGGGCg -3'
miRNA:   3'- cgUUUGGUCUCGGA-CGCuaUC---------------UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 56219 0.71 0.798459
Target:  5'- aCGAGCCGcGAGCCguccaGCGGguccgcGGGGGCg -3'
miRNA:   3'- cGUUUGGU-CUCGGa----CGCUau----CUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 170166 0.66 0.978632
Target:  5'- cGCcGGCCGGGGgCUG----AGGGGGCu -3'
miRNA:   3'- -CGuUUGGUCUCgGACgcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 57043 0.77 0.516224
Target:  5'- gGCGAagccGCCAGGGUUgagGCGggAGGGGGCc -3'
miRNA:   3'- -CGUU----UGGUCUCGGa--CGCuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 159902 0.78 0.477189
Target:  5'- -gAGGCCGGGGCCcucgaaGAUGGGGGGCa -3'
miRNA:   3'- cgUUUGGUCUCGGacg---CUAUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 94933 0.73 0.720318
Target:  5'- aCGAugCAGgggacguGGCCgcUGCGGUAGAGGGg -3'
miRNA:   3'- cGUUugGUC-------UCGG--ACGCUAUCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 167404 0.73 0.735328
Target:  5'- -gGGGCCGGGGCCUgGCGggGGccagcgcggggucccGGGGCg -3'
miRNA:   3'- cgUUUGGUCUCGGA-CGCuaUC---------------UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 166649 0.76 0.556482
Target:  5'- cGCGGacGCCAGAGCgaGCGGgaaGGGGGaGCg -3'
miRNA:   3'- -CGUU--UGGUCUCGgaCGCUa--UCUCC-CG- -5'
29145 3' -53.2 NC_006146.1 + 54997 0.71 0.798459
Target:  5'- gGguGGCCGGaAGCCccccggGCGGgauGGGGGCg -3'
miRNA:   3'- -CguUUGGUC-UCGGa-----CGCUau-CUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 41012 0.71 0.816379
Target:  5'- gGCGAAgagccgggcgUCAGAGCCgUGgGA-GGAGGGCc -3'
miRNA:   3'- -CGUUU----------GGUCUCGG-ACgCUaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 167304 0.75 0.618337
Target:  5'- -gGGGCCGGcGCCUGCag-GGGGGGCc -3'
miRNA:   3'- cgUUUGGUCuCGGACGcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 149977 0.73 0.711227
Target:  5'- -gGGGCCAGGGCCUGCaGGUcggccGGAcucaGGGCc -3'
miRNA:   3'- cgUUUGGUCUCGGACG-CUA-----UCU----CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.