miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 3' -53.2 NC_006146.1 + 1275 0.66 0.978632
Target:  5'- cGCcAACgGGAGCa---GAgGGAGGGCg -3'
miRNA:   3'- -CGuUUGgUCUCGgacgCUaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 2207 0.66 0.978632
Target:  5'- cGCcAACgGGAGCa---GAgGGAGGGCg -3'
miRNA:   3'- -CGuUUGgUCUCGgacgCUaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 2369 0.66 0.973604
Target:  5'- aCGAGCCGGGacaggcGUCcGCGGgcuuccAGAGGGCu -3'
miRNA:   3'- cGUUUGGUCU------CGGaCGCUa-----UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 3139 0.66 0.978632
Target:  5'- cGCcAACgGGAGCa---GAgGGAGGGCg -3'
miRNA:   3'- -CGuUUGgUCUCGgacgCUaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 4663 0.68 0.924936
Target:  5'- cGCcguCCuGGGCCggguggGCGAggcGGGGGCa -3'
miRNA:   3'- -CGuuuGGuCUCGGa-----CGCUau-CUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 9376 0.68 0.935426
Target:  5'- gGCAGcuGCCAGGGUUUGU---GGAGGuGCa -3'
miRNA:   3'- -CGUU--UGGUCUCGGACGcuaUCUCC-CG- -5'
29145 3' -53.2 NC_006146.1 + 10508 0.68 0.940303
Target:  5'- cGCAGGCUcuGGUUUGCGAgacuGGGCg -3'
miRNA:   3'- -CGUUUGGucUCGGACGCUaucuCCCG- -5'
29145 3' -53.2 NC_006146.1 + 10735 0.66 0.970791
Target:  5'- gGC-AGCCAGAGCCaGCc----GGGGCc -3'
miRNA:   3'- -CGuUUGGUCUCGGaCGcuaucUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 11537 0.68 0.944935
Target:  5'- uGUAGGCCuuGGCCaaucaGCGGUcccuaaGGGGGGCu -3'
miRNA:   3'- -CGUUUGGucUCGGa----CGCUA------UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 12297 0.7 0.865743
Target:  5'- aGCuGAACCAGAaCCUGC--UGGAGcGGCu -3'
miRNA:   3'- -CG-UUUGGUCUcGGACGcuAUCUC-CCG- -5'
29145 3' -53.2 NC_006146.1 + 12883 0.66 0.972782
Target:  5'- gGCAGGCCgggucucgggucugGGGGUCUGUGGUGGuGaGCc -3'
miRNA:   3'- -CGUUUGG--------------UCUCGGACGCUAUCuCcCG- -5'
29145 3' -53.2 NC_006146.1 + 14194 0.69 0.907354
Target:  5'- ----cCCGGAGCCUG-GAcGGGGaGGCg -3'
miRNA:   3'- cguuuGGUCUCGGACgCUaUCUC-CCG- -5'
29145 3' -53.2 NC_006146.1 + 14841 0.72 0.760832
Target:  5'- uCGGGcCCGGGGCC-GCGGgaggccgAGGGGGCa -3'
miRNA:   3'- cGUUU-GGUCUCGGaCGCUa------UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 15049 0.72 0.747187
Target:  5'- gGCccGCCGG-GCCUGCGAggaggcacuggcGGGGGCu -3'
miRNA:   3'- -CGuuUGGUCuCGGACGCUau----------CUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 15285 0.69 0.901006
Target:  5'- gGCuGAACCGGAGCgaGgGGgaGGAGGGg -3'
miRNA:   3'- -CG-UUUGGUCUCGgaCgCUa-UCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 15459 0.66 0.976215
Target:  5'- aGCAgagcgagacccuGACCgAGAcgcuguGCCUGCGcguGUGGGGGGa -3'
miRNA:   3'- -CGU------------UUGG-UCU------CGGACGC---UAUCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 15961 0.66 0.970499
Target:  5'- gGCAGGCCggucucgggucugGGGGUCUGUGGUGGuGaGCc -3'
miRNA:   3'- -CGUUUGG-------------UCUCGGACGCUAUCuCcCG- -5'
29145 3' -53.2 NC_006146.1 + 15966 0.68 0.918745
Target:  5'- aCAGACCuGGgggcguucccugcGCCUGCGA---AGGGCg -3'
miRNA:   3'- cGUUUGGuCU-------------CGGACGCUaucUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 18112 0.66 0.970791
Target:  5'- aGCGGGCCuccaacGUCUuCGAccUGGAGGGCa -3'
miRNA:   3'- -CGUUUGGucu---CGGAcGCU--AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 18987 0.66 0.973058
Target:  5'- gGCAgGGCCGGAGCCaGaccccaguGGGGGCc -3'
miRNA:   3'- -CGU-UUGGUCUCGGaCgcuau---CUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.