miRNA display CGI


Results 1 - 20 of 216 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 3' -53.2 NC_006146.1 + 170523 0.68 0.940303
Target:  5'- gGCGGGC-GGGGCCUG----AGGGGGCg -3'
miRNA:   3'- -CGUUUGgUCUCGGACgcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 170199 0.73 0.735328
Target:  5'- -gGGGCCGGGGCCUgGCGggGGccagcgcggggucccGGGGCg -3'
miRNA:   3'- cgUUUGGUCUCGGA-CGCuaUC---------------UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 170166 0.66 0.978632
Target:  5'- cGCcGGCCGGGGgCUG----AGGGGGCu -3'
miRNA:   3'- -CGuUUGGUCUCgGACgcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 170093 0.66 0.96777
Target:  5'- gGCGGGa-GGGGCCgGCGccgcagGGGGGGCc -3'
miRNA:   3'- -CGUUUggUCUCGGaCGCua----UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 170039 0.66 0.970791
Target:  5'- cGC-GGCCAGucCCUG-GAUgucggGGAGGGCc -3'
miRNA:   3'- -CGuUUGGUCucGGACgCUA-----UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 169953 0.69 0.887593
Target:  5'- gGCAcuguGCCAGGGCCUuCGGgacgGGAGGccgGCg -3'
miRNA:   3'- -CGUu---UGGUCUCGGAcGCUa---UCUCC---CG- -5'
29145 3' -53.2 NC_006146.1 + 169268 0.73 0.735328
Target:  5'- -gGGGCCGGGGCCUgGCGggGGccagcgcggggucccGGGGCg -3'
miRNA:   3'- cgUUUGGUCUCGGA-CGCuaUC---------------UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 169235 0.66 0.978632
Target:  5'- cGCcGGCCGGGGgCUG----AGGGGGCu -3'
miRNA:   3'- -CGuUUGGUCUCgGACgcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 169168 0.75 0.618337
Target:  5'- -gGGGCCGGcGCCUGCag-GGGGGGCc -3'
miRNA:   3'- cgUUUGGUCuCGGACGcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 169107 0.66 0.970791
Target:  5'- cGC-GGCCAGucCCUG-GAUgucggGGAGGGCc -3'
miRNA:   3'- -CGuUUGGUCucGGACgCUA-----UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 169021 0.69 0.887593
Target:  5'- gGCAcuguGCCAGGGCCUuCGGgacgGGAGGccgGCg -3'
miRNA:   3'- -CGUu---UGGUCUCGGAcGCUa---UCUCC---CG- -5'
29145 3' -53.2 NC_006146.1 + 168336 0.73 0.735328
Target:  5'- -gGGGCCGGGGCCUgGCGggGGccagcgcggggucccGGGGCg -3'
miRNA:   3'- cgUUUGGUCUCGGA-CGCuaUC---------------UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 168303 0.66 0.978632
Target:  5'- cGCcGGCCGGGGgCUG----AGGGGGCu -3'
miRNA:   3'- -CGuUUGGUCUCgGACgcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 168236 0.75 0.618337
Target:  5'- -gGGGCCGGcGCCUGCag-GGGGGGCc -3'
miRNA:   3'- cgUUUGGUCuCGGACGcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 168175 0.66 0.970791
Target:  5'- cGC-GGCCAGucCCUG-GAUgucggGGAGGGCc -3'
miRNA:   3'- -CGuUUGGUCucGGACgCUA-----UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 168145 0.7 0.880536
Target:  5'- cCGGGCUuGGGCCUGCGAgGGccGGGUa -3'
miRNA:   3'- cGUUUGGuCUCGGACGCUaUCu-CCCG- -5'
29145 3' -53.2 NC_006146.1 + 168089 0.69 0.887593
Target:  5'- gGCAcuguGCCAGGGCCUuCGGgacgGGAGGccgGCg -3'
miRNA:   3'- -CGUu---UGGUCUCGGAcGCUa---UCUCC---CG- -5'
29145 3' -53.2 NC_006146.1 + 167404 0.73 0.735328
Target:  5'- -gGGGCCGGGGCCUgGCGggGGccagcgcggggucccGGGGCg -3'
miRNA:   3'- cgUUUGGUCUCGGA-CGCuaUC---------------UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 167371 0.66 0.978632
Target:  5'- cGCcGGCCGGGGgCUG----AGGGGGCu -3'
miRNA:   3'- -CGuUUGGUCUCgGACgcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 167304 0.75 0.618337
Target:  5'- -gGGGCCGGcGCCUGCag-GGGGGGCc -3'
miRNA:   3'- cgUUUGGUCuCGGACGcuaUCUCCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.