miRNA display CGI


Results 21 - 40 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 3' -53.2 NC_006146.1 + 149977 0.73 0.711227
Target:  5'- -gGGGCCAGGGCCUGCaGGUcggccGGAcucaGGGCc -3'
miRNA:   3'- cgUUUGGUCUCGGACG-CUA-----UCU----CCCG- -5'
29145 3' -53.2 NC_006146.1 + 157280 0.73 0.71224
Target:  5'- -gGGACCAGGGCCUccuggGCGucucugggucuggacUGGAGGGCc -3'
miRNA:   3'- cgUUUGGUCUCGGA-----CGCu--------------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 144968 0.73 0.71224
Target:  5'- -gGGACCAGGGCCUccuggGCGucucugggucuggacUGGAGGGCc -3'
miRNA:   3'- cgUUUGGUCUCGGA-----CGCu--------------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 148046 0.73 0.71224
Target:  5'- -gGGACCAGGGCCUccuggGCGucucugggucuggacUGGAGGGCc -3'
miRNA:   3'- cgUUUGGUCUCGGA-----CGCu--------------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 151124 0.73 0.71224
Target:  5'- -gGGACCAGGGCCUccuggGCGucucugggucuggacUGGAGGGCc -3'
miRNA:   3'- cgUUUGGUCUCGGA-----CGCu--------------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 141890 0.73 0.71224
Target:  5'- -gGGACCAGGGCCUccuggGCGucucugggucuggacUGGAGGGCc -3'
miRNA:   3'- cgUUUGGUCUCGGA-----CGCu--------------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 154202 0.73 0.71224
Target:  5'- -gGGACCAGGGCCUccuggGCGucucugggucuggacUGGAGGGCc -3'
miRNA:   3'- cgUUUGGUCUCGGA-----CGCu--------------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 94933 0.73 0.720318
Target:  5'- aCGAugCAGgggacguGGCCgcUGCGGUAGAGGGg -3'
miRNA:   3'- cGUUugGUC-------UCGG--ACGCUAUCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 162030 0.73 0.731344
Target:  5'- -aAAACUgGGAGCCUGgGGgcGGGGGCa -3'
miRNA:   3'- cgUUUGG-UCUCGGACgCUauCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 169268 0.73 0.735328
Target:  5'- -gGGGCCGGGGCCUgGCGggGGccagcgcggggucccGGGGCg -3'
miRNA:   3'- cgUUUGGUCUCGGA-CGCuaUC---------------UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 170199 0.73 0.735328
Target:  5'- -gGGGCCGGGGCCUgGCGggGGccagcgcggggucccGGGGCg -3'
miRNA:   3'- cgUUUGGUCUCGGA-CGCuaUC---------------UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 167404 0.73 0.735328
Target:  5'- -gGGGCCGGGGCCUgGCGggGGccagcgcggggucccGGGGCg -3'
miRNA:   3'- cgUUUGGUCUCGGA-CGCuaUC---------------UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 168336 0.73 0.735328
Target:  5'- -gGGGCCGGGGCCUgGCGggGGccagcgcggggucccGGGGCg -3'
miRNA:   3'- cgUUUGGUCUCGGA-CGCuaUC---------------UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 40889 0.73 0.741275
Target:  5'- -gGAGCCGGGGCCucgucUGCGAUcc-GGGCg -3'
miRNA:   3'- cgUUUGGUCUCGG-----ACGCUAucuCCCG- -5'
29145 3' -53.2 NC_006146.1 + 15049 0.72 0.747187
Target:  5'- gGCccGCCGG-GCCUGCGAggaggcacuggcGGGGGCu -3'
miRNA:   3'- -CGuuUGGUCuCGGACGCUau----------CUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 41052 0.72 0.760832
Target:  5'- cGCGgcGGCCcugGGGGCCUcGgGGUGGAGGGa -3'
miRNA:   3'- -CGU--UUGG---UCUCGGA-CgCUAUCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 14841 0.72 0.760832
Target:  5'- uCGGGcCCGGGGCC-GCGGgaggccgAGGGGGCa -3'
miRNA:   3'- cGUUU-GGUCUCGGaCGCUa------UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 128194 0.72 0.760832
Target:  5'- uGCcAGCCcGAGCggGCGcUGGGGGGCu -3'
miRNA:   3'- -CGuUUGGuCUCGgaCGCuAUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 141574 0.72 0.789262
Target:  5'- -gGAGCCGGGGCCU-CGG-GGAGGGa -3'
miRNA:   3'- cgUUUGGUCUCGGAcGCUaUCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 150807 0.72 0.789262
Target:  5'- -gGAGCCGGGGCCU-CGG-GGAGGGa -3'
miRNA:   3'- cgUUUGGUCUCGGAcGCUaUCUCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.