miRNA display CGI


Results 21 - 40 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 3' -53.2 NC_006146.1 + 128845 0.66 0.974672
Target:  5'- gGUAAGCCcggccaggcacaggaAGGGCCa-CGAagAGGGGGCg -3'
miRNA:   3'- -CGUUUGG---------------UCUCGGacGCUa-UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 2369 0.66 0.973604
Target:  5'- aCGAGCCGGGacaggcGUCcGCGGgcuuccAGAGGGCu -3'
miRNA:   3'- cGUUUGGUCU------CGGaCGCUa-----UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 46409 0.66 0.973604
Target:  5'- -gAGACCAG-GCCgagucccGCGuagaacgAGGGGGCc -3'
miRNA:   3'- cgUUUGGUCuCGGa------CGCua-----UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 128648 0.66 0.973604
Target:  5'- aGCuGAGCCAGcuCCUcGCGccGGAGGGg -3'
miRNA:   3'- -CG-UUUGGUCucGGA-CGCuaUCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 98995 0.66 0.973604
Target:  5'- cCAggUCAGAgGCCgcGCGcaGGAGGGUc -3'
miRNA:   3'- cGUuuGGUCU-CGGa-CGCuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 18987 0.66 0.973058
Target:  5'- gGCAgGGCCGGAGCCaGaccccaguGGGGGCc -3'
miRNA:   3'- -CGU-UUGGUCUCGGaCgcuau---CUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 22116 0.66 0.972782
Target:  5'- gGCAGGCCgggucucgggucugGGGGUCUGUGGUGGuGaGCc -3'
miRNA:   3'- -CGUUUGG--------------UCUCGGACGCUAUCuCcCG- -5'
29145 3' -53.2 NC_006146.1 + 25194 0.66 0.972782
Target:  5'- gGCAGGCCgggucucgggucugGGGGUCUGUGGUGGuGaGCc -3'
miRNA:   3'- -CGUUUGG--------------UCUCGGACGCUAUCuCcCG- -5'
29145 3' -53.2 NC_006146.1 + 12883 0.66 0.972782
Target:  5'- gGCAGGCCgggucucgggucugGGGGUCUGUGGUGGuGaGCc -3'
miRNA:   3'- -CGUUUGG--------------UCUCGGACGCUAUCuCcCG- -5'
29145 3' -53.2 NC_006146.1 + 19038 0.66 0.972782
Target:  5'- gGCAGGCCgggucucgggucugGGGGUCUGUGGUGGuGaGCc -3'
miRNA:   3'- -CGUUUGG--------------UCUCGGACGCUAUCuCcCG- -5'
29145 3' -53.2 NC_006146.1 + 28272 0.66 0.972782
Target:  5'- gGCAGGCCgggucucgggucugGGGGUCUGUGGUGGuGaGCc -3'
miRNA:   3'- -CGUUUGG--------------UCUCGGACGCUAUCuCcCG- -5'
29145 3' -53.2 NC_006146.1 + 102796 0.66 0.972504
Target:  5'- cGCGGACCGGcuGGCCgcccaccuggaucGCGc--GGGGGCu -3'
miRNA:   3'- -CGUUUGGUC--UCGGa------------CGCuauCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 80577 0.66 0.971657
Target:  5'- aGCAGgccuuucacacguGCCGGGGCCUGaauucagaCGAucucaagaccacguuUAGAGaGGCa -3'
miRNA:   3'- -CGUU-------------UGGUCUCGGAC--------GCU---------------AUCUC-CCG- -5'
29145 3' -53.2 NC_006146.1 + 169107 0.66 0.970791
Target:  5'- cGC-GGCCAGucCCUG-GAUgucggGGAGGGCc -3'
miRNA:   3'- -CGuUUGGUCucGGACgCUA-----UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 170039 0.66 0.970791
Target:  5'- cGC-GGCCAGucCCUG-GAUgucggGGAGGGCc -3'
miRNA:   3'- -CGuUUGGUCucGGACgCUA-----UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 150545 0.66 0.970791
Target:  5'- uCGGGCU--GGCCUGCc--AGGGGGCa -3'
miRNA:   3'- cGUUUGGucUCGGACGcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 68569 0.66 0.970791
Target:  5'- gGCGAGCCGagaucgaucuGGGCCUGCcccc--GGGCg -3'
miRNA:   3'- -CGUUUGGU----------CUCGGACGcuaucuCCCG- -5'
29145 3' -53.2 NC_006146.1 + 147467 0.66 0.970791
Target:  5'- uCGGGCU--GGCCUGCc--AGGGGGCa -3'
miRNA:   3'- cGUUUGGucUCGGACGcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 18112 0.66 0.970791
Target:  5'- aGCGGGCCuccaacGUCUuCGAccUGGAGGGCa -3'
miRNA:   3'- -CGUUUGGucu---CGGAcGCU--AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 153623 0.66 0.970791
Target:  5'- uCGGGCU--GGCCUGCc--AGGGGGCa -3'
miRNA:   3'- cGUUUGGucUCGGACGcuaUCUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.