miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 3' -53.2 NC_006146.1 + 57008 0.65 0.98043
Target:  5'- aGgGGGCCAuGGCCgaggaggaggugGCGGUGGAGugcGGCa -3'
miRNA:   3'- -CgUUUGGUcUCGGa-----------CGCUAUCUC---CCG- -5'
29145 3' -53.2 NC_006146.1 + 145262 0.66 0.978632
Target:  5'- --cGACCAGcGCC-GUGAUcuuggagcugaGGGGGGCc -3'
miRNA:   3'- cguUUGGUCuCGGaCGCUA-----------UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 168303 0.66 0.978632
Target:  5'- cGCcGGCCGGGGgCUG----AGGGGGCu -3'
miRNA:   3'- -CGuUUGGUCUCgGACgcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 170166 0.66 0.978632
Target:  5'- cGCcGGCCGGGGgCUG----AGGGGGCu -3'
miRNA:   3'- -CGuUUGGUCUCgGACgcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 48229 0.66 0.978632
Target:  5'- gGCGcGCCuGGGUgaGCGccgcgcGGAGGGCc -3'
miRNA:   3'- -CGUuUGGuCUCGgaCGCua----UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 169235 0.66 0.978632
Target:  5'- cGCcGGCCGGGGgCUG----AGGGGGCu -3'
miRNA:   3'- -CGuUUGGUCUCgGACgcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 167371 0.66 0.978632
Target:  5'- cGCcGGCCGGGGgCUG----AGGGGGCu -3'
miRNA:   3'- -CGuUUGGUCUCgGACgcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 40822 0.66 0.978632
Target:  5'- gGCcuuGGCCAuGAGCUUGguaaGGggcAGGGGGCg -3'
miRNA:   3'- -CGu--UUGGU-CUCGGACg---CUa--UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 66695 0.66 0.978632
Target:  5'- -uGAACCcucGGCUUGCGGccccguGGGGGCg -3'
miRNA:   3'- cgUUUGGuc-UCGGACGCUau----CUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 167035 0.66 0.978632
Target:  5'- -gAGACCAGcAGCUucucguucaUGCGAUcccagguccGGuAGGGCa -3'
miRNA:   3'- cgUUUGGUC-UCGG---------ACGCUA---------UC-UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 1275 0.66 0.978632
Target:  5'- cGCcAACgGGAGCa---GAgGGAGGGCg -3'
miRNA:   3'- -CGuUUGgUCUCGgacgCUaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 2207 0.66 0.978632
Target:  5'- cGCcAACgGGAGCa---GAgGGAGGGCg -3'
miRNA:   3'- -CGuUUGgUCUCGgacgCUaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 3139 0.66 0.978632
Target:  5'- cGCcAACgGGAGCa---GAgGGAGGGCg -3'
miRNA:   3'- -CGuUUGgUCUCGgacgCUaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 114943 0.66 0.976215
Target:  5'- cGCu-ACCccuGGGCg-GCGAUggcGGGGGGCa -3'
miRNA:   3'- -CGuuUGGu--CUCGgaCGCUA---UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 123089 0.66 0.976215
Target:  5'- gGC-AGCCcGAGCCcaugagacgGCGGUGGgcgcuagacGGGGCu -3'
miRNA:   3'- -CGuUUGGuCUCGGa--------CGCUAUC---------UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 15459 0.66 0.976215
Target:  5'- aGCAgagcgagacccuGACCgAGAcgcuguGCCUGCGcguGUGGGGGGa -3'
miRNA:   3'- -CGU------------UUGG-UCU------CGGACGC---UAUCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 41863 0.66 0.976215
Target:  5'- gGCu-ACCGGGGCCUcGUGA-AGAGGu- -3'
miRNA:   3'- -CGuuUGGUCUCGGA-CGCUaUCUCCcg -5'
29145 3' -53.2 NC_006146.1 + 137905 0.66 0.976215
Target:  5'- cGUGGA-CAGGGCCgGgGGUuccGGGGGCa -3'
miRNA:   3'- -CGUUUgGUCUCGGaCgCUAu--CUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 106213 0.66 0.976215
Target:  5'- ---uGCCAGGGCCUgGUGuccUGGGGGaGUa -3'
miRNA:   3'- cguuUGGUCUCGGA-CGCu--AUCUCC-CG- -5'
29145 3' -53.2 NC_006146.1 + 157531 0.66 0.976215
Target:  5'- cGCAGACCAcgguGGUC-GCGGU-GAGGGa -3'
miRNA:   3'- -CGUUUGGUc---UCGGaCGCUAuCUCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.