miRNA display CGI


Results 41 - 60 of 216 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 3' -53.2 NC_006146.1 + 142566 0.66 0.970791
Target:  5'- gGCuAGgCGGAGCCUGCGugcGGAuuGGCc -3'
miRNA:   3'- -CGuUUgGUCUCGGACGCua-UCUc-CCG- -5'
29145 3' -53.2 NC_006146.1 + 18112 0.66 0.970791
Target:  5'- aGCGGGCCuccaacGUCUuCGAccUGGAGGGCa -3'
miRNA:   3'- -CGUUUGGucu---CGGAcGCU--AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 147467 0.66 0.970791
Target:  5'- uCGGGCU--GGCCUGCc--AGGGGGCa -3'
miRNA:   3'- cGUUUGGucUCGGACGcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 150545 0.66 0.970791
Target:  5'- uCGGGCU--GGCCUGCc--AGGGGGCa -3'
miRNA:   3'- cGUUUGGucUCGGACGcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 153623 0.66 0.970791
Target:  5'- uCGGGCU--GGCCUGCc--AGGGGGCa -3'
miRNA:   3'- cGUUUGGucUCGGACGcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 68569 0.66 0.970791
Target:  5'- gGCGAGCCGagaucgaucuGGGCCUGCcccc--GGGCg -3'
miRNA:   3'- -CGUUUGGU----------CUCGGACGcuaucuCCCG- -5'
29145 3' -53.2 NC_006146.1 + 156700 0.66 0.970791
Target:  5'- uCGGGCU--GGCCUGCc--AGGGGGCa -3'
miRNA:   3'- cGUUUGGucUCGGACGcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 169107 0.66 0.970791
Target:  5'- cGC-GGCCAGucCCUG-GAUgucggGGAGGGCc -3'
miRNA:   3'- -CGuUUGGUCucGGACgCUA-----UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 15961 0.66 0.970499
Target:  5'- gGCAGGCCggucucgggucugGGGGUCUGUGGUGGuGaGCc -3'
miRNA:   3'- -CGUUUGG-------------UCUCGGACGCUAUCuCcCG- -5'
29145 3' -53.2 NC_006146.1 + 51990 0.66 0.969004
Target:  5'- uGCGGGCCGGGcGCgUuucggacgagagagaGCGA--GAGGGCa -3'
miRNA:   3'- -CGUUUGGUCU-CGgA---------------CGCUauCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 54035 0.66 0.96777
Target:  5'- uGCGccuGGCCGG-GCCggaUGUGGUGGAGGa- -3'
miRNA:   3'- -CGU---UUGGUCuCGG---ACGCUAUCUCCcg -5'
29145 3' -53.2 NC_006146.1 + 42371 0.66 0.96777
Target:  5'- cGCGccGCCAGGGUggGCGA---GGGGCg -3'
miRNA:   3'- -CGUu-UGGUCUCGgaCGCUaucUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 170093 0.66 0.96777
Target:  5'- gGCGGGa-GGGGCCgGCGccgcagGGGGGGCc -3'
miRNA:   3'- -CGUUUggUCUCGGaCGCua----UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 155771 0.66 0.96777
Target:  5'- uGUAGACCccgccgcagaAGAGCCgcuCGGUGGcccugGGGGCc -3'
miRNA:   3'- -CGUUUGG----------UCUCGGac-GCUAUC-----UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 127089 0.66 0.96777
Target:  5'- -aGGGCCAGGGCggaGCGGUGGGacaGGCa -3'
miRNA:   3'- cgUUUGGUCUCGga-CGCUAUCUc--CCG- -5'
29145 3' -53.2 NC_006146.1 + 36226 0.66 0.96777
Target:  5'- cGCAAGCC--GGCCgGgGAggaGGcAGGGCg -3'
miRNA:   3'- -CGUUUGGucUCGGaCgCUa--UC-UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 161407 0.67 0.964533
Target:  5'- uGCAGAUCAuaGGCCUGUGccAGGcGGGUg -3'
miRNA:   3'- -CGUUUGGUc-UCGGACGCuaUCU-CCCG- -5'
29145 3' -53.2 NC_006146.1 + 122567 0.67 0.962486
Target:  5'- cCAGACUGGAcGCCUggcccaccaccgccaGCaccuccgacGGUGGAGGGCg -3'
miRNA:   3'- cGUUUGGUCU-CGGA---------------CG---------CUAUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 160682 0.67 0.961076
Target:  5'- gGCAcauGACCAGGGCC---GGUAGAGG-Ca -3'
miRNA:   3'- -CGU---UUGGUCUCGGacgCUAUCUCCcG- -5'
29145 3' -53.2 NC_006146.1 + 64158 0.67 0.960718
Target:  5'- -aGGGCCucGGAGUCUGCcaggcugGGUGG-GGGCa -3'
miRNA:   3'- cgUUUGG--UCUCGGACG-------CUAUCuCCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.