miRNA display CGI


Results 41 - 60 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 3' -53.2 NC_006146.1 + 168089 0.69 0.887593
Target:  5'- gGCAcuguGCCAGGGCCUuCGGgacgGGAGGccgGCg -3'
miRNA:   3'- -CGUu---UGGUCUCGGAcGCUa---UCUCC---CG- -5'
29145 3' -53.2 NC_006146.1 + 54997 0.71 0.798459
Target:  5'- gGguGGCCGGaAGCCccccggGCGGgauGGGGGCg -3'
miRNA:   3'- -CguUUGGUC-UCGGa-----CGCUau-CUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 98487 0.78 0.467657
Target:  5'- cGCGGACCAaggucagcaGAGacuCCUGUGAUGGAGGGg -3'
miRNA:   3'- -CGUUUGGU---------CUC---GGACGCUAUCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 167157 0.69 0.887593
Target:  5'- gGCAcuguGCCAGGGCCUuCGGgacgGGAGGccgGCg -3'
miRNA:   3'- -CGUu---UGGUCUCGGAcGCUa---UCUCC---CG- -5'
29145 3' -53.2 NC_006146.1 + 68080 0.78 0.430554
Target:  5'- aGCAAGCgCAGAGCCcccgcGCGAUccaGGuGGGCg -3'
miRNA:   3'- -CGUUUG-GUCUCGGa----CGCUA---UCuCCCG- -5'
29145 3' -53.2 NC_006146.1 + 120569 0.68 0.944935
Target:  5'- -aAAACCAGAGCCUGgucaGAgAGAacaGGaGCg -3'
miRNA:   3'- cgUUUGGUCUCGGACg---CUaUCU---CC-CG- -5'
29145 3' -53.2 NC_006146.1 + 57043 0.77 0.516224
Target:  5'- gGCGAagccGCCAGGGUUgagGCGggAGGGGGCc -3'
miRNA:   3'- -CGUU----UGGUCUCGGa--CGCuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 129856 0.68 0.944935
Target:  5'- gGCcc-CCAGGGCCgccGCGGacgGGGGGGa -3'
miRNA:   3'- -CGuuuGGUCUCGGa--CGCUa--UCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 102579 0.68 0.935427
Target:  5'- cCGAGCC-GAGCgUGCaGGUcGGGGGGUc -3'
miRNA:   3'- cGUUUGGuCUCGgACG-CUA-UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 45045 0.68 0.924936
Target:  5'- -gAGGCCGGGGCCgGCucccUAG-GGGCg -3'
miRNA:   3'- cgUUUGGUCUCGGaCGcu--AUCuCCCG- -5'
29145 3' -53.2 NC_006146.1 + 55656 0.69 0.907354
Target:  5'- uGCAgcAGCCGGAGCCagGCGGcguuGAaggccagcacGGGCa -3'
miRNA:   3'- -CGU--UUGGUCUCGGa-CGCUau--CU----------CCCG- -5'
29145 3' -53.2 NC_006146.1 + 43435 0.69 0.894418
Target:  5'- cGUccAUCAGuAGCCUGCGGgccgccacaucUGGAGcGGCa -3'
miRNA:   3'- -CGuuUGGUC-UCGGACGCU-----------AUCUC-CCG- -5'
29145 3' -53.2 NC_006146.1 + 169953 0.69 0.887593
Target:  5'- gGCAcuguGCCAGGGCCUuCGGgacgGGAGGccgGCg -3'
miRNA:   3'- -CGUu---UGGUCUCGGAcGCUa---UCUCC---CG- -5'
29145 3' -53.2 NC_006146.1 + 147179 0.7 0.880536
Target:  5'- cGCAGACCGGcGCCccuucgcccggUGCGcagaGGAGGGg -3'
miRNA:   3'- -CGUUUGGUCuCGG-----------ACGCua--UCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 68376 0.7 0.865744
Target:  5'- gGC-AACCAGGGCCU-UGAUGacgacGGGGGUg -3'
miRNA:   3'- -CGuUUGGUCUCGGAcGCUAU-----CUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 49004 0.7 0.850084
Target:  5'- uGCAGACCggcuaGGAGCCgcaggGCGuucuccGGGGCg -3'
miRNA:   3'- -CGUUUGG-----UCUCGGa----CGCuauc--UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 41012 0.71 0.816379
Target:  5'- gGCGAAgagccgggcgUCAGAGCCgUGgGA-GGAGGGCc -3'
miRNA:   3'- -CGUUU----------GGUCUCGG-ACgCUaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 168336 0.73 0.735328
Target:  5'- -gGGGCCGGGGCCUgGCGggGGccagcgcggggucccGGGGCg -3'
miRNA:   3'- cgUUUGGUCUCGGA-CGCuaUC---------------UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 149977 0.73 0.711227
Target:  5'- -gGGGCCAGGGCCUGCaGGUcggccGGAcucaGGGCc -3'
miRNA:   3'- cgUUUGGUCUCGGACG-CUA-----UCU----CCCG- -5'
29145 3' -53.2 NC_006146.1 + 167304 0.75 0.618337
Target:  5'- -gGGGCCGGcGCCUGCag-GGGGGGCc -3'
miRNA:   3'- cgUUUGGUCuCGGACGcuaUCUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.