miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 5' -61.7 NC_006146.1 + 95361 0.67 0.624971
Target:  5'- uGUGGCCCCCGUUaccagGCaguccaucgugugguGAAGGCagcucacgcuGGUGCUc -3'
miRNA:   3'- -CACCGGGGGUAG-----UG---------------CUUCCG----------CCGCGA- -5'
29145 5' -61.7 NC_006146.1 + 169033 0.67 0.591535
Target:  5'- -gGGCCUUCGggACgGGAGGcCGGCGCg -3'
miRNA:   3'- caCCGGGGGUagUG-CUUCC-GCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 168101 0.67 0.591535
Target:  5'- -gGGCCUUCGggACgGGAGGcCGGCGCg -3'
miRNA:   3'- caCCGGGGGUagUG-CUUCC-GCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 73033 0.67 0.630886
Target:  5'- -aGGCCCUCGUucCACGGcccgGGGuCGGCGg- -3'
miRNA:   3'- caCCGGGGGUA--GUGCU----UCC-GCCGCga -5'
29145 5' -61.7 NC_006146.1 + 3363 0.67 0.6299
Target:  5'- cGUGGCCuCCCAggagaggggC-CGggGGCgcggcccGGCGCc -3'
miRNA:   3'- -CACCGG-GGGUa--------GuGCuuCCG-------CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 2431 0.67 0.6299
Target:  5'- cGUGGCCuCCCAggagaggggC-CGggGGCgcggcccGGCGCc -3'
miRNA:   3'- -CACCGG-GGGUa--------GuGCuuCCG-------CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 568 0.67 0.6299
Target:  5'- cGUGGCCuCCCAggagaggggC-CGggGGCgcggcccGGCGCc -3'
miRNA:   3'- -CACCGG-GGGUa--------GuGCuuCCG-------CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 137594 0.67 0.611181
Target:  5'- -cGGagCCCCAggacCGAGcGGCGGCGCa -3'
miRNA:   3'- caCCg-GGGGUagu-GCUU-CCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 137472 0.67 0.611181
Target:  5'- -cGGagCCCCAggacCGAGcGGCGGCGCa -3'
miRNA:   3'- caCCg-GGGGUagu-GCUU-CCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 106037 0.67 0.611181
Target:  5'- cGUGGCCgCCCAUC-CGGAcauuggagccuGGCagaaGGUGCa -3'
miRNA:   3'- -CACCGG-GGGUAGuGCUU-----------CCG----CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 110816 0.67 0.58175
Target:  5'- -cGGCCCggcgauugcCCGUagcucCACGGgacgAGGCGGCGCc -3'
miRNA:   3'- caCCGGG---------GGUA-----GUGCU----UCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 123286 0.67 0.58175
Target:  5'- cGUGG-CCCUAUCgGCGAucccuGGCGGcCGCc -3'
miRNA:   3'- -CACCgGGGGUAG-UGCUu----CCGCC-GCGa -5'
29145 5' -61.7 NC_006146.1 + 27331 0.67 0.58175
Target:  5'- cUGGCCCuCCAaaaACaGcGGGUGGCGCg -3'
miRNA:   3'- cACCGGG-GGUag-UG-CuUCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 1499 0.67 0.6299
Target:  5'- cGUGGCCuCCCAggagaggggC-CGggGGCgcggcccGGCGCc -3'
miRNA:   3'- -CACCGG-GGGUa--------GuGCuuCCG-------CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 167169 0.67 0.591535
Target:  5'- -gGGCCUUCGggACgGGAGGcCGGCGCg -3'
miRNA:   3'- caCCGGGGGUagUG-CUUCC-GCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 68089 0.67 0.600365
Target:  5'- -aGaGCCCCCG-CGCGAuccagguGGGCGGCcaGCc -3'
miRNA:   3'- caC-CGGGGGUaGUGCU-------UCCGCCG--CGa -5'
29145 5' -61.7 NC_006146.1 + 98320 0.67 0.611181
Target:  5'- cGUGGCCgUCuggCACG-GGGCcgGGCGCg -3'
miRNA:   3'- -CACCGGgGGua-GUGCuUCCG--CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 53847 0.68 0.543003
Target:  5'- uGUGGUCCCgGagGCGGuAGGCGaCGCUg -3'
miRNA:   3'- -CACCGGGGgUagUGCU-UCCGCcGCGA- -5'
29145 5' -61.7 NC_006146.1 + 127844 0.68 0.571998
Target:  5'- cUGGCaCCCC-UCAacCGccAGGCGGCGUa -3'
miRNA:   3'- cACCG-GGGGuAGU--GCu-UCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 55642 0.68 0.562286
Target:  5'- -gGGCCCCCGagGggugcagcagcCGGagccAGGCGGCGUUg -3'
miRNA:   3'- caCCGGGGGUagU-----------GCU----UCCGCCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.