miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 5' -61.7 NC_006146.1 + 148096 0.66 0.693672
Target:  5'- -aGGCCCCUGUcCGCGAGGGagagucucuggccgGGCGg- -3'
miRNA:   3'- caCCGGGGGUA-GUGCUUCCg-------------CCGCga -5'
29145 5' -61.7 NC_006146.1 + 151174 0.66 0.693672
Target:  5'- -aGGCCCCUGUcCGCGAGGGagagucucuggccgGGCGg- -3'
miRNA:   3'- caCCGGGGGUA-GUGCUUCCg-------------CCGCga -5'
29145 5' -61.7 NC_006146.1 + 154252 0.66 0.693672
Target:  5'- -aGGCCCCUGUcCGCGAGGGagagucucuggccgGGCGg- -3'
miRNA:   3'- caCCGGGGGUA-GUGCUUCCg-------------CCGCga -5'
29145 5' -61.7 NC_006146.1 + 157330 0.66 0.693672
Target:  5'- -aGGCCCCUGUcCGCGAGGGagagucucuggccgGGCGg- -3'
miRNA:   3'- caCCGGGGGUA-GUGCUUCCg-------------CCGCga -5'
29145 5' -61.7 NC_006146.1 + 10994 0.66 0.689784
Target:  5'- gGUGcCCCCCAUCuuCGAGGGCcccGGC-CUc -3'
miRNA:   3'- -CACcGGGGGUAGu-GCUUCCG---CCGcGA- -5'
29145 5' -61.7 NC_006146.1 + 114335 0.66 0.680033
Target:  5'- -cGGCCgCCCcUgACGGAGGUGGaCGg- -3'
miRNA:   3'- caCCGG-GGGuAgUGCUUCCGCC-GCga -5'
29145 5' -61.7 NC_006146.1 + 47753 0.66 0.680033
Target:  5'- cUGGCCCUgGggACGGAGaGCGGC-CUc -3'
miRNA:   3'- cACCGGGGgUagUGCUUC-CGCCGcGA- -5'
29145 5' -61.7 NC_006146.1 + 14187 0.66 0.680033
Target:  5'- cUGGaCCCCCGgagccuggaCGgGGAGGCgguGGCGCg -3'
miRNA:   3'- cACC-GGGGGUa--------GUgCUUCCG---CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 48578 0.66 0.667304
Target:  5'- -cGGCCCCCuggCACaagagccagacgauGggGGUGGCa-- -3'
miRNA:   3'- caCCGGGGGua-GUG--------------CuuCCGCCGcga -5'
29145 5' -61.7 NC_006146.1 + 122636 0.66 0.66043
Target:  5'- -gGGCCCUCuuUCGCGccaggacGGCGGCGg- -3'
miRNA:   3'- caCCGGGGGu-AGUGCuu-----CCGCCGCga -5'
29145 5' -61.7 NC_006146.1 + 141940 0.66 0.693672
Target:  5'- -aGGCCCCUGUcCGCGAGGGagagucucuggccgGGCGg- -3'
miRNA:   3'- caCCGGGGGUA-GUGCUUCCg-------------CCGCga -5'
29145 5' -61.7 NC_006146.1 + 71481 0.67 0.611181
Target:  5'- -gGGCCUgCCGUUugGccGGUGGUGCc -3'
miRNA:   3'- caCCGGG-GGUAGugCuuCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 68089 0.67 0.600365
Target:  5'- -aGaGCCCCCG-CGCGAuccagguGGGCGGCcaGCc -3'
miRNA:   3'- caC-CGGGGGUaGUGCU-------UCCGCCG--CGa -5'
29145 5' -61.7 NC_006146.1 + 123286 0.67 0.58175
Target:  5'- cGUGG-CCCUAUCgGCGAucccuGGCGGcCGCc -3'
miRNA:   3'- -CACCgGGGGUAG-UGCUu----CCGCC-GCGa -5'
29145 5' -61.7 NC_006146.1 + 110816 0.67 0.58175
Target:  5'- -cGGCCCggcgauugcCCGUagcucCACGGgacgAGGCGGCGCc -3'
miRNA:   3'- caCCGGG---------GGUA-----GUGCU----UCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 106037 0.67 0.611181
Target:  5'- cGUGGCCgCCCAUC-CGGAcauuggagccuGGCagaaGGUGCa -3'
miRNA:   3'- -CACCGG-GGGUAGuGCUU-----------CCG----CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 137472 0.67 0.611181
Target:  5'- -cGGagCCCCAggacCGAGcGGCGGCGCa -3'
miRNA:   3'- caCCg-GGGGUagu-GCUU-CCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 137594 0.67 0.611181
Target:  5'- -cGGagCCCCAggacCGAGcGGCGGCGCa -3'
miRNA:   3'- caCCg-GGGGUagu-GCUU-CCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 568 0.67 0.6299
Target:  5'- cGUGGCCuCCCAggagaggggC-CGggGGCgcggcccGGCGCc -3'
miRNA:   3'- -CACCGG-GGGUa--------GuGCuuCCG-------CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 1499 0.67 0.6299
Target:  5'- cGUGGCCuCCCAggagaggggC-CGggGGCgcggcccGGCGCc -3'
miRNA:   3'- -CACCGG-GGGUa--------GuGCuuCCG-------CCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.