miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 5' -61.7 NC_006146.1 + 157330 0.66 0.693672
Target:  5'- -aGGCCCCUGUcCGCGAGGGagagucucuggccgGGCGg- -3'
miRNA:   3'- caCCGGGGGUA-GUGCUUCCg-------------CCGCga -5'
29145 5' -61.7 NC_006146.1 + 48578 0.66 0.667304
Target:  5'- -cGGCCCCCuggCACaagagccagacgauGggGGUGGCa-- -3'
miRNA:   3'- caCCGGGGGua-GUG--------------CuuCCGCCGcga -5'
29145 5' -61.7 NC_006146.1 + 122636 0.66 0.66043
Target:  5'- -gGGCCCUCuuUCGCGccaggacGGCGGCGg- -3'
miRNA:   3'- caCCGGGGGu-AGUGCuu-----CCGCCGCga -5'
29145 5' -61.7 NC_006146.1 + 100759 0.66 0.66043
Target:  5'- -cGGCCaggagCCAg-GCGAAGGCGGCa-- -3'
miRNA:   3'- caCCGGg----GGUagUGCUUCCGCCGcga -5'
29145 5' -61.7 NC_006146.1 + 13270 0.66 0.66043
Target:  5'- cUGGUgCCCAagACccAGGCGGUGCc -3'
miRNA:   3'- cACCGgGGGUagUGcuUCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 53860 0.66 0.657481
Target:  5'- gGUGGCCCUgugCAUCaacaccuacugggaGCGGcgGGGCGGCugGCUu -3'
miRNA:   3'- -CACCGGGG---GUAG--------------UGCU--UCCGCCG--CGA- -5'
29145 5' -61.7 NC_006146.1 + 166001 0.66 0.650593
Target:  5'- -gGGUCCggcuCUGUCACc-AGGCGGCGCa -3'
miRNA:   3'- caCCGGG----GGUAGUGcuUCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 14666 0.66 0.650593
Target:  5'- -cGGCaCCCCGUcCACGGccgAGGgGGCccGCg -3'
miRNA:   3'- caCCG-GGGGUA-GUGCU---UCCgCCG--CGa -5'
29145 5' -61.7 NC_006146.1 + 21106 0.66 0.650593
Target:  5'- uGUGGCCCCCAUCucccUGGAGGCc----- -3'
miRNA:   3'- -CACCGGGGGUAGu---GCUUCCGccgcga -5'
29145 5' -61.7 NC_006146.1 + 14187 0.66 0.680033
Target:  5'- cUGGaCCCCCGgagccuggaCGgGGAGGCgguGGCGCg -3'
miRNA:   3'- cACC-GGGGGUa--------GUgCUUCCG---CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 47753 0.66 0.680033
Target:  5'- cUGGCCCUgGggACGGAGaGCGGC-CUc -3'
miRNA:   3'- cACCGGGGgUagUGCUUC-CGCCGcGA- -5'
29145 5' -61.7 NC_006146.1 + 114335 0.66 0.680033
Target:  5'- -cGGCCgCCCcUgACGGAGGUGGaCGg- -3'
miRNA:   3'- caCCGG-GGGuAgUGCUUCCGCC-GCga -5'
29145 5' -61.7 NC_006146.1 + 154252 0.66 0.693672
Target:  5'- -aGGCCCCUGUcCGCGAGGGagagucucuggccgGGCGg- -3'
miRNA:   3'- caCCGGGGGUA-GUGCUUCCg-------------CCGCga -5'
29145 5' -61.7 NC_006146.1 + 151174 0.66 0.693672
Target:  5'- -aGGCCCCUGUcCGCGAGGGagagucucuggccgGGCGg- -3'
miRNA:   3'- caCCGGGGGUA-GUGCUUCCg-------------CCGCga -5'
29145 5' -61.7 NC_006146.1 + 148096 0.66 0.693672
Target:  5'- -aGGCCCCUGUcCGCGAGGGagagucucuggccgGGCGg- -3'
miRNA:   3'- caCCGGGGGUA-GUGCUUCCg-------------CCGCga -5'
29145 5' -61.7 NC_006146.1 + 145018 0.66 0.693672
Target:  5'- -aGGCCCCUGUcCGCGAGGGagagucucuggccgGGCGg- -3'
miRNA:   3'- caCCGGGGGUA-GUGCUUCCg-------------CCGCga -5'
29145 5' -61.7 NC_006146.1 + 141940 0.66 0.693672
Target:  5'- -aGGCCCCUGUcCGCGAGGGagagucucuggccgGGCGg- -3'
miRNA:   3'- caCCGGGGGUA-GUGCUUCCg-------------CCGCga -5'
29145 5' -61.7 NC_006146.1 + 17423 0.66 0.689784
Target:  5'- -cGGCCauugugcgCCGUCgACGGAGGCaGGCGg- -3'
miRNA:   3'- caCCGGg-------GGUAG-UGCUUCCG-CCGCga -5'
29145 5' -61.7 NC_006146.1 + 40374 0.66 0.689784
Target:  5'- -aGGCCCCCugGUCGCcgcc-CGGCGCg -3'
miRNA:   3'- caCCGGGGG--UAGUGcuuccGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 10994 0.66 0.689784
Target:  5'- gGUGcCCCCCAUCuuCGAGGGCcccGGC-CUc -3'
miRNA:   3'- -CACcGGGGGUAGu-GCUUCCG---CCGcGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.