miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 5' -61.7 NC_006146.1 + 160441 1.06 0.00148
Target:  5'- gGUGGCCCCCAUCACGAAGGCGGCGCUc -3'
miRNA:   3'- -CACCGGGGGUAGUGCUUCCGCCGCGA- -5'
29145 5' -61.7 NC_006146.1 + 1486 0.7 0.454178
Target:  5'- aGUGGCCUCCugacCAUGGcagccggccucguuuGGGUGGUGCUg -3'
miRNA:   3'- -CACCGGGGGua--GUGCU---------------UCCGCCGCGA- -5'
29145 5' -61.7 NC_006146.1 + 11399 0.69 0.47751
Target:  5'- uUGGCCCCUGggaCAuCGAAGGUGGaGCa -3'
miRNA:   3'- cACCGGGGGUa--GU-GCUUCCGCCgCGa -5'
29145 5' -61.7 NC_006146.1 + 124159 0.66 0.693672
Target:  5'- aUGGCCCCaauguaguagaagagCugauUCGCaAGGGgGGCGCUg -3'
miRNA:   3'- cACCGGGG---------------Gu---AGUGcUUCCgCCGCGA- -5'
29145 5' -61.7 NC_006146.1 + 53193 0.75 0.2244
Target:  5'- -cGGCCCCgGccUugGggGGCGGCGUg -3'
miRNA:   3'- caCCGGGGgUa-GugCuuCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 170686 0.74 0.269503
Target:  5'- -gGGCgCCCCggggaccGUCGCGggGGCaccGGCGCg -3'
miRNA:   3'- caCCG-GGGG-------UAGUGCuuCCG---CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 150480 0.72 0.330181
Target:  5'- aGUGGCCCCCugguagccGUCccuguCGGAGGCGGaggGCa -3'
miRNA:   3'- -CACCGGGGG--------UAGu----GCUUCCGCCg--CGa -5'
29145 5' -61.7 NC_006146.1 + 139151 0.72 0.337432
Target:  5'- -gGGCUCCCGUCcccCGggGG-GGCGCc -3'
miRNA:   3'- caCCGGGGGUAGu--GCuuCCgCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 168826 0.72 0.344798
Target:  5'- -cGGCCCggggaCCcUCGCGggGGCaccGGCGCg -3'
miRNA:   3'- caCCGGG-----GGuAGUGCuuCCG---CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 120036 0.7 0.433201
Target:  5'- -gGGCacagaCCCcgCGCGGAgacuGGUGGCGCUg -3'
miRNA:   3'- caCCGg----GGGuaGUGCUU----CCGCCGCGA- -5'
29145 5' -61.7 NC_006146.1 + 41207 0.71 0.391379
Target:  5'- -aGGCgCCCCAUC-CGcGGGCacugGGCGCg -3'
miRNA:   3'- caCCG-GGGGUAGuGCuUCCG----CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 167894 0.72 0.344798
Target:  5'- -cGGCCCggggaCCcUCGCGggGGCaccGGCGCg -3'
miRNA:   3'- caCCGGG-----GGuAGUGCuuCCG---CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 128794 0.77 0.167038
Target:  5'- -aGGCCCUCGUagucgugcgccgucCGCGAAGGaCGGCGCg -3'
miRNA:   3'- caCCGGGGGUA--------------GUGCUUCC-GCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 66547 0.71 0.397074
Target:  5'- -gGGCCCCgaugucuuugaucuUGUgGCGcAGGCGGCGCa -3'
miRNA:   3'- caCCGGGG--------------GUAgUGCuUCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 56828 0.76 0.194569
Target:  5'- cUGGCCCCCGaggcggccUCuggcgGCGggGGCGGCaGCUu -3'
miRNA:   3'- cACCGGGGGU--------AG-----UGCuuCCGCCG-CGA- -5'
29145 5' -61.7 NC_006146.1 + 170639 0.72 0.344798
Target:  5'- -gGGCuCCCCcUCACG--GGUGGCGCg -3'
miRNA:   3'- caCCG-GGGGuAGUGCuuCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 65725 0.71 0.399531
Target:  5'- -cGGCCCCgGUCACu--GGaCGGUGCg -3'
miRNA:   3'- caCCGGGGgUAGUGcuuCC-GCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 56561 0.69 0.47751
Target:  5'- -aGGCCCCCGUCcaccucCGucagGGGCGGCcggGCg -3'
miRNA:   3'- caCCGGGGGUAGu-----GCu---UCCGCCG---CGa -5'
29145 5' -61.7 NC_006146.1 + 46440 0.75 0.2244
Target:  5'- -gGGCCCCCAg---GAAGGCGGCGg- -3'
miRNA:   3'- caCCGGGGGUagugCUUCCGCCGCga -5'
29145 5' -61.7 NC_006146.1 + 170507 0.72 0.323046
Target:  5'- -cGGaCCCCCAgcgCGCGGcGGGCGGgGCc -3'
miRNA:   3'- caCC-GGGGGUa--GUGCU-UCCGCCgCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.